Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0734 ATGGACCTCTACAACCGTAGACTGCTCCTACTAGACAGAGATGAATACTCCACCGACGGATCCTCACCACCGGGGTCAATGGTCGCAGCGTCGTCGTCGTCGTCGTCGCTGTTGGCAAGGCCTTTGAAACTTCCGGCACCTCCAGCCTTCAGTTCCTACCTCGCTTACGCCATCCTCATCATCATCTTCTTCTTGGGCTTCATCTCTCTGTTCATCCGATGGTTCGCCGAAGACTCCCCCCCTTCCCGCCGCCACTCCTCTCCCGCGCCTTCGAATCATTCTTCTCCGTGCGGTGGTCTCGACCAAGCCACCGTCCAATCCCTGTCGGTGTTTGTGTACGGCGGAGAAGCGAAGCACCAAGAAGACTGCGCCATTTGTCTAAGCGAATTCGAGAACGGTGAGGGCATTAAGATGATACCGAACTGTAAGCACGTGTTCCACCAGGAGTGTCTCGACACGTGGCTAGTCTCGCACGTGACATGCCCGATTTGCCGAGGTTCGAGATTTTTACCGGTGGAACAGCACACAGGGATGGGTAAGATGGAGCCGAGTAGTGATCAGGTTGATCAAGGAGATTCAACGGTAGCCAATGGTGAAACGTGGGGAGAAGGTAGAGTAGTGGGGACACGTAATCAAAGGAGCAGTAGCTGTTCGACCTTTAGAGATACAGTAGTTCTGCGAAGAACATTGAGCTATTGA 699 0.5365 MDLYNRRLLLLDRDEYSTDGSSPPGSMVAASSSSSSLLARPLKLPAPPAFSSYLAYAILIIIFFLGFISLFIRWFAEDSPPSRRHSSPAPSNHSSPCGGLDQATVQSLSVFVYGGEAKHQEDCAICLSEFENGEGIKMIPNCKHVFHQECLDTWLVSHVTCPICRGSRFLPVEQHTGMGKMEPSSDQVDQGDSTVANGETWGEGRVVGTRNQRSSSCSTFRDTVVLRRTLSY 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0734 232 CDD RING-H2_EL5-like 122 165 - -
Dere07g0734 232 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
Dere07g0734 232 SUPERFAMILY RING/U-box 116 171 - -
Dere07g0734 232 SMART ringv_2 122 165 IPR011016 GO:0008270
Dere07g0734 232 MobiDBLite consensus disorder prediction 180 197 - -
Dere07g0734 232 FunFam E3 ubiquitin-protein ligase ATL6 89 169 - -
Dere07g0734 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 40 166 - -
Dere07g0734 232 Pfam Ring finger domain 122 165 IPR001841 -
Dere07g0734 232 MobiDBLite consensus disorder prediction 178 200 - -
Dere07g0734 232 SMART ring_2 123 164 IPR001841 -
Dere07g0734 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0734 Dere-ChrDere07 10744688 10745386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0734 56 231 C3H Transcription Factor Family AT2G27940 37.629 2.50e-32 116