LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g0723	ATGGCGGAGGACCGGAACGGCGATAGGAATGAGGAAAGTGATTACAGTTCAGAGGACGAAGGGACCGAGGACTATAGGCGAGGAGGATATCATGCGGTTCGCATTGGTGACACTTTCAAAAATGGGTGCTATGTGGTACAGAGCAAGCTCGGCTGGGGACATTTTTCTACTGTGTGGCTTGCTTGGGATACCCAAAGATCGCGTTATGTGGCCTTAAAAATTCAAAAGAGTGCCCAGCACTACACTGAAGCTGCAATGGACGAAATAAAGATTCTCAAACAGATTGCCGAAGGGGACCTGGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCAGGGCCAAATGGCCAGCATGTGTGTATGGTTTTTGAATTCCTGGGTGACAATCTTCTGACCCTTATTAAGTATAGTAATTACCGAGGGATTCCTCTCTCAATGGTTAAAGAAATTTGTTTTCATATTTTGGTGGGATTGGATTACTTGCATCGTGAGCTATCTGTAATACACACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCAATGATAGATCCATCCAAGGATCCTAGAAAATCAGGTGCTCCACTTATCCTTCCAAACACCAAGGATAAGACTGTTTCAAAAAATGGGACCACAAAAGACAATATCAGTTCAAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGGAAAAAGGCTAAGAAGGCAGCTCAAAGTTGTGTTGAGAAGGAAAGTCCCAAGGAAGGTGATGAGGATTCTAAACCACCTGAAGTAAAAGATTGTAGCAATGACGTAAAACTGATTACAGAATCTGTTGAAGATAAACCTGGTAGTCCTGTGACTAAAGATGAATCAGTAGAGGTTGTCGGAACCAAGGACGCTCCAAAAGGTAGCCATGGTCCACAGAGAGTTAACCACTTTGTGAGAAAGGAGTTGCTTGCAGCTGTTGATCGTAAATGCAAGCTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGATGTCCTGAGGTTATTATTGCATCCAAGTACTCAACTCCAGCTGATTTATGGTCCTTTGCTTGCATATGCTTTGAGCTTGCCACAGGCGATGTTCTTTTCGATCCTCACAGTGGTGACAACTATGAGAGGGATGAGGATCATCTGGCTTTGATGATAGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTAGGTGGACGCTTTTCTCGAGAGTTTTTTAATAAATATGGCGATTTAAAGCACATCCGTCAGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGATGGAGAAGTATGATATCAGTGAGCTAGATGCAAATGACATGGCTGACTTCCTTGTTCCAATACTTGATTTTGACCCTGTAAAGAGGCCAACAGCTGCTCAGTGCCTTAATCATCCATGGATCACTGCAGGTCCTCGAATTCTTGAGCCCTCTGTGACAACTGTTGAAACTGAGGCCACAGACAAGGTATTATCTGAAAAGATGAAGGAAAACGCTGAGCTGGAGGAGGTGGAAGTTGGTGTGGGGAGTATGACCATCGATGGAACTCTTAAGCCACTCAAAGATTCCCAGCCTATATAG	1632	0.432	MAEDRNGDRNEESDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTQRSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDLDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSNYRGIPLSMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSMIDPSKDPRKSGAPLILPNTKDKTVSKNGTTKDNISSNGDLTKNQKKKLRKKAKKAAQSCVEKESPKEGDEDSKPPEVKDCSNDVKLITESVEDKPGSPVTKDESVEVVGTKDAPKGSHGPQRVNHFVRKELLAAVDRKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVIIASKYSTPADLWSFACICFELATGDVLFDPHSGDNYERDEDHLALMIELLGMMPRKIALGGRFSREFFNKYGDLKHIRQLRFWPLNKVLMEKYDISELDANDMADFLVPILDFDPVKRPTAAQCLNHPWITAGPRILEPSVTTVETEATDKVLSEKMKENAELEEVEVGVGSMTIDGTLKPLKDSQPI	543

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g0723	543	MobiDBLite	consensus disorder prediction	1	23	-	-
	Dere07g0723	543	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	11	504	-	-
	Dere07g0723	543	Gene3D	Phosphorylase Kinase; domain 1	20	126	-	-
	Dere07g0723	543	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Dere07g0723	543	CDD	STKc_SRPK	33	485	-	-
	Dere07g0723	543	ProSitePatterns	Protein kinases ATP-binding region signature.	50	73	IPR017441	GO:0005524
	Dere07g0723	543	SUPERFAMILY	Protein kinase-like (PK-like)	39	495	IPR011009	-
	Dere07g0723	543	Pfam	Protein kinase domain	320	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g0723	543	Pfam	Protein kinase domain	44	183	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g0723	543	FunFam	Serine/threonine-protein kinase SRPK-like protein	315	485	-	-
	Dere07g0723	543	MobiDBLite	consensus disorder prediction	194	267	-	-
	Dere07g0723	543	MobiDBLite	consensus disorder prediction	206	227	-	-
	Dere07g0723	543	FunFam	CMGC/SRPK protein kinase	30	129	-	-
	Dere07g0723	543	SMART	serkin_6	44	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g0723	543	Gene3D	Transferase(Phosphotransferase) domain 1	127	486	-	-
	Dere07g0723	543	ProSiteProfiles	Protein kinase domain profile.	44	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g0723	543	MobiDBLite	consensus disorder prediction	240	267	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g0723	Dere-ChrDere07	10585896	10589496	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g0723	1	533	EF-hand Containing Proteins	AT5G22840	66.852	0.0	709

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Dere07g0723		Pkinase	2.9e-21	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dere08g0994	08	13907777	13910278	Dere07g0723	07	10585896	10589496	CCT