Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0715 ATGGAACCCCCTGTTGGCAGATCGAGGGGTCGACCGAGGAAACGGAGGAGAAAAGAGGATGAAATTGGGACCGATGATGGGAGATCGATTCCTGATTTGAAAAGGCAAGCTGTTGGGACAAGAGCAATAGCACTGGTTGGACGACATGTACTTAAAGAGTTCAAGGGAAGTGGGAATTTTCTTGGGAAAGTTGTGTATTACGCGTGTGGTTTATATAGAGTCAATTATGAGGATGGTGATTCTGAGGATTTAGATAGCAGCGAGATTCGTGGAATACTTCTTAACGACTGTGATTTTGACGATGATTTGACTAAAAGGAGGAATGATTTAGATGAATTGGTGTTGAAGAATAGTGCGAAGATAACACATGTTGCTGAGAAGAGTTCTGCCGACTTGAACAAAGATGTGTGTGGGTTTGAGGCCCCTGTATCAAGTGAATTGCCTGATGGGTTGCTGATGGAACACGACGAGGTAGAAGTTGAAGGGGATGCTGATTCATCAGGTGACTCAATTGCGGGCTTAAAGGATGCGGATTCTGTGTCTGATGCCGAGACGCCATTTCTACCTCCATTGCAGTTGCCACCGTCTTCAGGAACTATTGGGGTGCCAGAGCCATATGTGTCTCATCTTTTTGCTGTCTATGGATTTTTACGGTCATTCAGCATTCGTCTGTTTTTAAGTCCGTTTTCTTTGGATGATTTTGTTGGTTCTCTTAACTGCCAAGTTTCGAATACTTTGTTTGATGCCATTCATGTTTCACTGATGCGTGCATTGAGGCGTCATCTTGAAACCCTTTCATCTGAGGGCTCAGAGCATGCATCAAAATGCATGAGGTGCAATGATTGGGGCTTGCTTGACACTTTGACTTGGCCTGTTTTTGTGATTCAGTATTTAGCAATCAATGGATACATAAAAGGATCCGAATGGAAAGGATTCAATGGCGAGATTTTTAATGGCGAGTATTATTTGTTACCTATGAGTAGGAAGTTGATTGTACTACAAATTCTCTGTGATGATGTTTTGGAGTCTGAGGAACTGAAGGCTGAAATGAGCATTCGTGAAGAATTAGAAGTTGGGATAGAGTGTGATGAAGATATCCTTGCAGAAGAAAATTGGCCAAGAAGAGTCCATCCACGAAACGCCAAAACTTCTGCTTGCAAGGATAAAGAAGCTACAAAGTTTGTTTTAGAATCAAATGCTGTGAAGCTATCTGGTAACTCTGTTTTAGATTTCAGAGACACTGGAAGGACTGAGGATGCTGATGTTGATAGAAATGGAGATGAATGCCGCCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGATGTCCATCTGCATATCACTCTAGGTGTATTGGAGTGATGAAAATGTTCATACCAGAAGGGCCTTGGTATTGTCCAGAGTGCAAAATTAATATGAATGGACCAACAGTTGTAAAGGGAACATCACTTAGAGGTGCTGAATTATTTGGAATTGATCTGTATGGACAAGTCTTCATGGGTACTTGCAACCACTTACTGGTGCTCACTGTCGGCAGTGAACTTTGTCTCAGGTATTACAACCAGAATGACATTTCAAAAGTTCTCCAAGTGCTTTATGCATCTGTAGAGCATAGACCTCTATACTATGGAATTTGCATGCCTATATTACAATATTGGAATATTCCAGAAAGTATCTTGCCTGTTTCTGTTACAACTGGGGCAGTTCTTAAGTCATCCAATACAGATGGAGATGCAAAGTTCTCTAGTTTATCACAGACTTCTTTAGGTGAAAAAGAGAATACAGCTGCTAATTTGGTGAAGGCAGAGTACCCTGAAACCGCTGGGAGTGCAATTCATGGTGATAATATGGTTCCATCTCTTGATGTCTCTTTGGTTAGAGAGACTAGTGCTCTTGAAAGCAGCATTGACGCTAGAACTAAGGAGTGCCTTACCATGAATACTATATATCCTGAGGAAACTAGGATGGACTCTGTCATCTTTGGTAGTCCTGATAGTCATCAGCGTGTTCTTTCTGAGATGACCTACCGAAGTTCTGTTGATAAATCAATGGCAGTAACTCCTGCTAAGTGGACCTTGGTAAACAGTCTTGGGCATGCAAATGATAAGCAGTTGCCTATAAATCTATACTTGCAAATTAAAGAAGGCAACCAAGTTAGTTCTGCAAAGGTTGAACACATTTCAGCCAAGGATTTTGCATACTTAGGCTTTTCTTATAAGCCTCAGTCATACATTAATCACTATATGCATGGTGATTTTGCTGCATCTGCTGCTGCTAAATTGGCTATTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCTGATAATTTGAGGAAAGTTACATCTGGAAGCACTTATTTGCAAGCAAAAGCATTCTCACTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGTTGGTGCCTTTCTTGTAAAGCTCCAGTCTCAAGCAAGAGAGGATGCATGCTAAATCATGCTGCCCTAAGTGCCACCAAAAGTGCTATAAAAGTCCTTGCTGGTCTTCCCGCTGTAAGGAGTGGAGAGGGAATTCTTCCTAGCATTGCAACATACATTATATATATGGAGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTCTAAGTGCAAATTACAGAATACAATGGCGTAAACAAGTTGAACAGGCTAAAACATTTAGTGCTATAAAGCCCCTTTTGCTTGAACTTGAGGAAAACATTCGCATAGTATCTTTCACTGGTGATTGGGTTAAGCTGATGGATGATTGGTTGCTTGAATCTTCTATAATTCAAGGTACTGCAAGTTTCCTTGGAACAATACAGACACGTGCAACAAGTGGAAGGCGTTACAAGAAACAGTCAGCTATTGATGAAGTTATTGCTGATGGTTGCCATGAAAACAACTTTGACTGGTGGTATGGTGGGAAATTCACCAAGTTTTTATTTCTGAAAGCAGTTTTGCCAAAATCTATGGTCAGAAAAGCAGCTCGCCAAGGTGGGTTGAGGAAAATTTCTGGTATTTCCTATGTTGATGGCTGTGAAATTCCTAAAAGAAGCAGGCAGATAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTCAGATACCTAGATTTTCATCTTAGATGGAGTGATCTGATTTGTCCTGAACAAAACCTCCTAGATGGGAAAGGTCAAGAGACTGAATCTTCTGCTTTCAGAAATGCTAATATCTGTGATAAAAAAGAAGTTGGGGGAAAACTTTTGTATGGAATTGCTTTTGGCAACCAAAAGCATCTTCCTTCTCGTATTATGAAAAATGTTATTGAAATAGAGCAAGATCCGGAAGGAAAGGAAAAATATTGGTTTTCTGAATCACGCATTCCTTTATATTTGGTAAAGGAGTATGAAGAAGATACGGAAAATGTGCTACCTCATAAAGAGAACTTGAATTTGGCATCTCAGCTGCAAATGAGGCGGTTGAAAGCTGCGTGCAAGGATATATTTTTGTACCTCACCTGCAAGAGAGATAACTTGAATATATTCTCATGTGCTGTGTGTCAGCAAGATGTTTTAATCGGGAATGCTCTCAAGTGCAGTGCATGTCAAGGTTATTGTCATGAAGGCTGTTCTATAAGTTCAACATCCTCTACAAACAAAGGAGTTGAGTTCTTGACCACATGCAAGCAATGTTGTTACACCAAATTGCTTACTCAGAAAGAGACCAGTCATGAATCTCCAACCAGTCCTTTACTCTTGCGAGGACAAGAACATAGCTCTTTGACTGTTTTGAAGGGGTCAGGACCCAAATGTTATGATCAAACCTTGAAATCTACCAGGATCAAGGATAATTGTCCTGACTTGAAACAAGGTGCTTCTGATTCTTCTTTGCCAACAAAAAGCCGTCGCAGAAATTGTTCTTGGGGTATTATATGGAATAAGAAGAATGTTGATGATACAGGCATTGATTTTAGGCATAAAAACATACTTTTAAAAGGAGGTGCAGGTGCATCTGAATTGAAACCTGTTTGTCACTTGTGCCGTAAGCCATATAGGTCTGATCTGATGTATATATGCTGTGAGACATGCAAAAATTGGTATCATGCTGATGCCGTTGAACTTGAAGAGTCAAAAATTTTAGATGTGTTGGGTTTCAAGTGTTGCAAGTGTCGCAGGATAAAATCTCCTGTGTGTCCTTACTCTGATGCAAAGCCCAAGATGCAGGAGGGCACTAAGAAATACCCAAGAGCTTCGAAGAAAGATCATTCTGGCACAGATGATTGTGGGATTATTTTTGAATTGAAAGGGTGTGAGCCTGCTACTCCCAATTTTCCCACCAGGGCTGGATTGAGACAAGACAATGACCCTCTGCTTTTCTCTCTTTCAAGTGCTGAGCTGGTAACTGAACCTAATACGGAAGTGGATGTTGAGAGGAATGCAGTCTCTGGTCCAGGGCTTCAGAAACTACCGGTGAGAAGACATGTTAAGCATGAGGGGGATGGTGATGAATTTGGAAGTATACTTTCACAGGCTGAATTTTTAGCACAAAATGGAGCAAGTAATCTGTCAGCTGCAGAGAAGGCATCATCCCCTTCTGTGGAATATGACCCTGCTGTTTGCCTGGACAGCAATCTGCTGAATGACTGTGGAAATGTGAATTACGATTTCATGGAGTTTGAACCCCATACCTACTTCTCTGTAACAGAATTGCTGCAGCCAGATGATAGTCAGTTTGATGGAGTTGATATATCATCTGGGGACTTGTCTGGATACTTGGAAAATTCTTGCACTGTGAATGGTGTTCCTGAAGAATCTGGAGCTGTTAGTTTAGTTGATAAATTGGAACCTGCAACTTACTTACAAGGCAGTGTTTATCATTGTTGCCAATGCTCACAGATGGAACCAGCCCCTGATCTCTATTGTGAGATTTGTGGGCTTTGGATTCACAGCGAATGTTCACCCTGGGTTGAATCACCGTCTAGTTTAGGAAGCTGGAGGTGTGGTAATTGTCGGGAATTGCAGTAG 5064 0.4143 MEPPVGRSRGRPRKRRRKEDEIGTDDGRSIPDLKRQAVGTRAIALVGRHVLKEFKGSGNFLGKVVYYACGLYRVNYEDGDSEDLDSSEIRGILLNDCDFDDDLTKRRNDLDELVLKNSAKITHVAEKSSADLNKDVCGFEAPVSSELPDGLLMEHDEVEVEGDADSSGDSIAGLKDADSVSDAETPFLPPLQLPPSSGTIGVPEPYVSHLFAVYGFLRSFSIRLFLSPFSLDDFVGSLNCQVSNTLFDAIHVSLMRALRRHLETLSSEGSEHASKCMRCNDWGLLDTLTWPVFVIQYLAINGYIKGSEWKGFNGEIFNGEYYLLPMSRKLIVLQILCDDVLESEELKAEMSIREELEVGIECDEDILAEENWPRRVHPRNAKTSACKDKEATKFVLESNAVKLSGNSVLDFRDTGRTEDADVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGPTVVKGTSLRGAELFGIDLYGQVFMGTCNHLLVLTVGSELCLRYYNQNDISKVLQVLYASVEHRPLYYGICMPILQYWNIPESILPVSVTTGAVLKSSNTDGDAKFSSLSQTSLGEKENTAANLVKAEYPETAGSAIHGDNMVPSLDVSLVRETSALESSIDARTKECLTMNTIYPEETRMDSVIFGSPDSHQRVLSEMTYRSSVDKSMAVTPAKWTLVNSLGHANDKQLPINLYLQIKEGNQVSSAKVEHISAKDFAYLGFSYKPQSYINHYMHGDFAASAAAKLAILSSEDSRSEGHVSDNLRKVTSGSTYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKAPVSSKRGCMLNHAALSATKSAIKVLAGLPAVRSGEGILPSIATYIIYMEESLRGLIVGPFLSANYRIQWRKQVEQAKTFSAIKPLLLELEENIRIVSFTGDWVKLMDDWLLESSIIQGTASFLGTIQTRATSGRRYKKQSAIDEVIADGCHENNFDWWYGGKFTKFLFLKAVLPKSMVRKAARQGGLRKISGISYVDGCEIPKRSRQIVWRAAVQMSRNASQLALQVRYLDFHLRWSDLICPEQNLLDGKGQETESSAFRNANICDKKEVGGKLLYGIAFGNQKHLPSRIMKNVIEIEQDPEGKEKYWFSESRIPLYLVKEYEEDTENVLPHKENLNLASQLQMRRLKAACKDIFLYLTCKRDNLNIFSCAVCQQDVLIGNALKCSACQGYCHEGCSISSTSSTNKGVEFLTTCKQCCYTKLLTQKETSHESPTSPLLLRGQEHSSLTVLKGSGPKCYDQTLKSTRIKDNCPDLKQGASDSSLPTKSRRRNCSWGIIWNKKNVDDTGIDFRHKNILLKGGAGASELKPVCHLCRKPYRSDLMYICCETCKNWYHADAVELEESKILDVLGFKCCKCRRIKSPVCPYSDAKPKMQEGTKKYPRASKKDHSGTDDCGIIFELKGCEPATPNFPTRAGLRQDNDPLLFSLSSAELVTEPNTEVDVERNAVSGPGLQKLPVRRHVKHEGDGDEFGSILSQAEFLAQNGASNLSAAEKASSPSVEYDPAVCLDSNLLNDCGNVNYDFMEFEPHTYFSVTELLQPDDSQFDGVDISSGDLSGYLENSCTVNGVPEESGAVSLVDKLEPATYLQGSVYHCCQCSQMEPAPDLYCEICGLWIHSECSPWVESPSSLGSWRCGNCRELQ 1687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0715 1687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1346 1419 IPR013083 -
Dere07g0715 1687 PANTHER PHD FINGER FAMILY PROTEIN 41 1650 - -
Dere07g0715 1687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 476 IPR013083 -
Dere07g0715 1687 ProSitePatterns Zinc finger PHD-type signature. 429 470 IPR019786 -
Dere07g0715 1687 ProSiteProfiles DDT domain profile. 204 264 IPR018501 -
Dere07g0715 1687 CDD PHD_SF 1639 1683 - -
Dere07g0715 1687 Pfam DDT domain 207 261 IPR018501 -
Dere07g0715 1687 SMART testlast3 204 264 IPR018501 -
Dere07g0715 1687 Pfam PHD-finger 429 471 IPR019787 -
Dere07g0715 1687 MobiDBLite consensus disorder prediction 1 31 - -
Dere07g0715 1687 SMART PHD_3 1639 1684 IPR001965 -
Dere07g0715 1687 SMART PHD_3 428 471 IPR001965 -
Dere07g0715 1687 SMART PHD_3 1356 1404 IPR001965 -
Dere07g0715 1687 SMART PHD_3 1196 1245 IPR001965 -
Dere07g0715 1687 MobiDBLite consensus disorder prediction 15 31 - -
Dere07g0715 1687 ProSiteProfiles Zinc finger PHD-type profile. 426 473 IPR019787 -
Dere07g0715 1687 SUPERFAMILY FYVE/PHD zinc finger 418 477 IPR011011 -
Dere07g0715 1687 SUPERFAMILY FYVE/PHD zinc finger 1355 1410 IPR011011 -
Dere07g0715 1687 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 318 350 IPR028942 -
Dere07g0715 1687 SUPERFAMILY FYVE/PHD zinc finger 1633 1685 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0715 Dere-ChrDere07 10518660 10525476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0715 294 602 EF-hand Containing Proteins AT5G22760 47.319 6.80e-78 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Dere07g0715 DDT 4.5e-13 No_clan