Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0707 ATGCGTCTTTCTGTAAATTCCTCAAAGAGATTGAAAGGGATAGAGAAAAATTTGGGTAGAAATAAAACATACAAGCTCCATTGTCAGGTTTCTTTCGGTCTTAAAACCCTATTTGGCTTGTGGTTCCTTGTTACTGCAATGGAGTTCTGGGGTGTTGAGGTCAAGGCCGGGGTGCCTGTTGAAGTAAATCCGGAAGATTTGGGTAAATGCATACACCTTTCTCAGGCTGCTCTTGGAGAGGCAAAGCATAAAGCAAGTGAACCTGTGGTCCTTCATCTGAAGTTTGGTGACCAGAAGGTTATTATAGGAACCCTTTCCCAGGAGAAATTCCCTCAAGTATCTTTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAACAGTGCGGATGATGTGGATTTCCCGATGATGACCAAAGATAATGCTAAAACTGATATAAAGCCCGAAGTAGCAAAGCCTGCTGCTTCTAAAAGTAATGATGTTAAGCTTGGTGAATCGAAAAAGCAAGTCAAGGTTGTGGATCCAAAGGAAGATGAGGATGAATCTGAAGATGATGACGACGATGAATTTGATGATGAAGATGATAGTTCTGATGAGGATATGTTGGTTGGTGATATTGACAGTGATGACGAGAGCGAGAGTGATGAAGATGATGAGGAAACCCCTCCAAAGAAGGCTGATCAGGGTAAGAAGAGACGTAATGAGTCTGCATCGAAAACTCCTGTTCCTGCCAAGAAAGCTAAATCTTCTACCCCTCAAAAAACTGATGGTAAGAAAGGTGGCCATCCAGCAACACCTCATCCTCTAAAGAAGGGTGGAAAGAGTCCTAAAAGTGACACCAAGGTCCAGTCTCCCAAATCTGGTGGACAGTTCACTTGTAAATCATGTAGCAAGTCTTTCACATCAGAAGGTGGTCTGCAACAACATTCAAAGGCTAAGCATGGTGGTCAGTGA 972 0.4249 MRLSVNSSKRLKGIEKNLGRNKTYKLHCQVSFGLKTLFGLWFLVTAMEFWGVEVKAGVPVEVNPEDLGKCIHLSQAALGEAKHKASEPVVLHLKFGDQKVIIGTLSQEKFPQVSFDLVLEKKFELSHNWKNGNSADDVDFPMMTKDNAKTDIKPEVAKPAASKSNDVKLGESKKQVKVVDPKEDEDESEDDDDDEFDDEDDSSDEDMLVGDIDSDDESESDEDDEETPPKKADQGKKRRNESASKTPVPAKKAKSSTPQKTDGKKGGHPATPHPLKKGGKSPKSDTKVQSPKSGGQFTCKSCSKSFTSEGGLQQHSKAKHGGQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0707 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 323 IPR013087 -
Dere07g0707 323 MobiDBLite consensus disorder prediction 284 314 - -
Dere07g0707 323 FunFam Histone deacetylase HDT1 47 135 - -
Dere07g0707 323 MobiDBLite consensus disorder prediction 149 323 - -
Dere07g0707 323 MobiDBLite consensus disorder prediction 183 224 - -
Dere07g0707 323 Gene3D Classic Zinc Finger 295 323 - -
Dere07g0707 323 ProSitePatterns Zinc finger C2H2 type domain signature. 299 320 IPR013087 -
Dere07g0707 323 Gene3D Nucleoplasmin core domain 43 137 - -
Dere07g0707 323 SMART c2h2final6 297 320 IPR013087 -
Dere07g0707 323 MobiDBLite consensus disorder prediction 167 182 - -
Dere07g0707 323 MobiDBLite consensus disorder prediction 225 245 - -
Dere07g0707 323 Pfam Nucleoplasmin-like domain 49 130 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0707 Dere-ChrDere07 10424764 10431645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0707 47 320 C2H2 Transcription Factor Family AT5G03740 41.611 6.75e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere07g0707 NPL 7.2e-10 CL0055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0976 08 13722844 13723768 Dere07g0707 07 10424764 10431645 CCT