Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0673 ATGAGATTATTCCAACGACAAGGCCAGTTTGGAAGGCCAACGACTTCTGATTTATCGCAAGATCCCTCGCAGAGATTCCACGAAAGACGTTCCTTGAAAATGGCGGAAGAACATAGATGCCAAGCTCCGCGCCTATGTGCAAACAACTGCGGCTTCTTCGGCAGCCCAGCGACGCAAAATTTATGCTCCAAATGCTACCGAGATTTGCAGCTCAAAGAGCAACAATCCTCGTCGGCGAAGCTGGTTCTCAATCAATCCCTAGTCCCTCCTCCGTCTACGACGACGAAATCAGAACCTTCTTCTTCGTCGCCGGAACCGGTTGCGGTTCCATCGTCGTCGGTTGCGGCTGATCCGCCGCGTACGGCTACGGAGGCGAAGAGTGCATCGCCGGCGCAGCCAAACAGGTGCATGACTTGCAGGCGGCGCGTGGGGATCACGGGCTTCAAGTGCCGTTGCGGGTTGACATTCTGCGGGTCCCACCGTTACCCTGAACAGCACGGGTGCGAGTTCGACTTCAAGATGATGGGTCGGGAGCAGATTGCTAAGGCCAATCCGGTAGTGAAGGCCGAGAAGCTCGAAAAGATCTGA 588 0.5527 MRLFQRQGQFGRPTTSDLSQDPSQRFHERRSLKMAEEHRCQAPRLCANNCGFFGSPATQNLCSKCYRDLQLKEQQSSSAKLVLNQSLVPPPSTTTKSEPSSSSPEPVAVPSSSVAADPPRTATEAKSASPAQPNRCMTCRRRVGITGFKCRCGLTFCGSHRYPEQHGCEFDFKMMGREQIAKANPVVKAEKLEKI 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0673 195 SMART AN1_Zf_4 136 173 IPR000058 GO:0008270
Dere07g0673 195 Pfam AN1-like Zinc finger 136 172 IPR000058 GO:0008270
Dere07g0673 195 PANTHER AN1-TYPE ZINC FINGER PROTEIN 42 195 - -
Dere07g0673 195 Pfam A20-like zinc finger 44 67 IPR002653 GO:0003677|GO:0008270
Dere07g0673 195 ProSiteProfiles Zinc finger A20-type profile. 40 74 IPR002653 GO:0003677|GO:0008270
Dere07g0673 195 Gene3D - 33 106 - -
Dere07g0673 195 SMART A20_3 43 67 IPR002653 GO:0003677|GO:0008270
Dere07g0673 195 ProSiteProfiles Zinc finger AN1-type profile. 130 176 IPR000058 GO:0008270
Dere07g0673 195 MobiDBLite consensus disorder prediction 81 131 - -
Dere07g0673 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 45 92 - -
Dere07g0673 195 MobiDBLite consensus disorder prediction 81 109 - -
Dere07g0673 195 MobiDBLite consensus disorder prediction 1 24 - -
Dere07g0673 195 MobiDBLite consensus disorder prediction 1 21 - -
Dere07g0673 195 SUPERFAMILY AN1-like Zinc finger 126 190 IPR035896 -
Dere07g0673 195 Gene3D - 109 191 IPR035896 -
Dere07g0673 195 FunFam Zinc finger AN1-type containing 6 110 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0673 Dere-ChrDere07 9856655 9858532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0673 34 195 C2H2 Transcription Factor Family AT3G52800 54.118 1.06e-49 157