Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0670 ATGGGTTTGAGAGATCAGTACTGCACTGTACAAGACAGGAATAATCTCTACTTTCACGCTTCTCCAACTTTCATAGAATGGCTCAAACCATCTGCTTCTTCTTCTTCAGATGAAAGTGCTGATCCAAACGAGGTCGTTCGGGAGACTATCCAATTTTTGCCTCCATCAAAAGAATTAGAAGTTGGAGAGGAAAAGGAGGTTTTTGGAGTAAAAGAAGAGAAGGTAGTACTGGAGCAAGTGGGTGTGGCTTTGCACATTGGGTTACCAACTAATAATTACACAGAAGAAGATTCTGATGAGGCTGATGAAAAGAAGGTTATTGATGTTAAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGTATGATGATGAAGAGAGACTTCCATGGATGTTCTAATTTTAACCCAGAGAGAAGGTTCTGGATACCAACTCCTGCACAGATCCTTATTGGGCCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGACACGGGTCCGAATTTAGGAAAGGACCAGACTCACTGAGAGGAACACAACCAGCAGCAATGCTGAGGCTACCATGTTACTGCTGTGCCCATGACTGCAAGAACAACATCAACCACCCAAGAGCTAAGCCACTCAAGGACTTCAGAACCCTCCAGACCCACTACAAGAGAAAGCATGGCACCAAACCCTTCATGTGCAGAAAGTGTGCCAAAACTTTCGCAGTCAAAGGGGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTGTGGTATTGCACCTGTGGTTCAGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATGAGGTCATTTGGAAAGGGTCACAAACCCCATCCTTCTCTTGAAGGCTTTGATCACAACGACAAGGATTCCGAAGAGGAAGAAGTTACTCATACATAA 954 0.4413 MGLRDQYCTVQDRNNLYFHASPTFIEWLKPSASSSSDESADPNEVVRETIQFLPPSKELEVGEEKEVFGVKEEKVVLEQVGVALHIGLPTNNYTEEDSDEADEKKVIDVKEEEEEEEEEEEEEGMMMKRDFHGCSNFNPERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLRGTQPAAMLRLPCYCCAHDCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHMRSFGKGHKPHPSLEGFDHNDKDSEEEEVTHT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0670 317 Gene3D Classic Zinc Finger 157 180 - -
Dere07g0670 317 FunFam Zinc finger protein WIP2 211 293 - -
Dere07g0670 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 295 IPR013087 -
Dere07g0670 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 185 IPR013087 -
Dere07g0670 317 Gene3D Classic Zinc Finger 201 289 - -
Dere07g0670 317 MobiDBLite consensus disorder prediction 91 125 - -
Dere07g0670 317 MobiDBLite consensus disorder prediction 287 317 - -
Dere07g0670 317 SUPERFAMILY beta-beta-alpha zinc fingers 228 262 IPR036236 -
Dere07g0670 317 Coils Coil 100 130 - -
Dere07g0670 317 SUPERFAMILY beta-beta-alpha zinc fingers 154 181 IPR036236 -
Dere07g0670 317 MobiDBLite consensus disorder prediction 109 124 - -
Dere07g0670 317 SMART c2h2final6 205 237 IPR013087 -
Dere07g0670 317 SMART c2h2final6 158 180 IPR013087 -
Dere07g0670 317 SMART c2h2final6 242 262 IPR013087 -
Dere07g0670 317 PANTHER ZINC FINGER PROTEIN WIP2 29 313 IPR043584 GO:0003700|GO:0010468
Dere07g0670 317 MobiDBLite consensus disorder prediction 291 317 - -
Dere07g0670 317 ProSitePatterns Zinc finger C2H2 type domain signature. 160 180 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0670 Dere-ChrDere07 9828781 9831483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0670 21 310 C2H2 Transcription Factor Family AT1G08290 54.328 1.42e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere07g0670 None None None