Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0659 ATGTATCACCAACATCAAGGAAAGAACATCCATTCTTCTTCAAGAATGCCAATCCCGGCTGAGAGGCATATGTTTCTTCAAACCGGAAATGGATCTGGTGATTCCGGACTTGTCCTCTCCACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCCAGGTTTATTGAAGCAGTCAATCAGCTAGGCGGAGCTGACAAGGCGACTCCCAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTGTATCATCTGAAGAGCCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGCACAAAGTAACAATGTGACGCACAAAATCAGTGCAGCAACGGGAGAAAGACTTTCTGAAACAAATGGAACTCATATGAACAACTTAAGCCTCGGCCCACAGGCTAACAAAGATTTACACATAAGCGAGGCCCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTAAATGAGCAACTTGAGGTACAGAGACACTTGCAGCTTCGCATTGAGGCCCAAGGGAAATACCTGCAGGCTGTGCTGGAGAAAGCTCAAGAAACACTTGGTAGACAGAACATGGGGATAGTAGGACTTGAAGCGGCTAAAGTTCAACTCTCAGAGCTTGTGTCTAAAGTATCCTCTCAGTGTTTGAATTCTGCCTTCTCAGAACTGAAGGAATTACAAGGATTCTGCCCACAGCAAACACAAAACAACCAGCCAACCGACTGCTCAATGGACAGCTGCCTCACATCCTGCGACGGATCTCAAAAGGACCAAGAGATACAAAATGGAGGGATGGGCTTACGACCCTTCAATGGCCATACGTTTATGGAAAGAAAGGAAGCTATGGAAGCACCCATCCTGAGGAACTCCGAACTCAAGTGGTGTGATGAAGTGAAAAAGAACAACACCTTCCTTAACAACCCTTTGGGCAAGAGTGCAGAAAGAAGAGGGTATGTTGCGGAAAGAAGTCCCAGCAACTTATCCATGAGCATTGGACTTGAACGAGAAACAGAGAATAATGGAAGCAGCATGTACCCTGAGAGACTAATGATGGGGAGAGAGTCCGGTGGTGAATTCCAACACCGAAACACTAGTAAGCCAGAATCAATGAAACCAGTGGAAGACAAGGTTTCCCAAGAATATAGATTGCCTTACTTTTCTGCAGCGAGACTGGACCTAAACACCCGTGAAGAAAACGATGCTGCAATGAGTTGTAAACAACTGGACTTGAATGGATTCAGCTGGAGCTGA 1260 0.4579 MYHQHQGKNIHSSSRMPIPAERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHAQSNNVTHKISAATGERLSETNGTHMNNLSLGPQANKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNMGIVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTQNNQPTDCSMDSCLTSCDGSQKDQEIQNGGMGLRPFNGHTFMERKEAMEAPILRNSELKWCDEVKKNNTFLNNPLGKSAERRGYVAERSPSNLSMSIGLERETENNGSSMYPERLMMGRESGGEFQHRNTSKPESMKPVEDKVSQEYRLPYFSAARLDLNTREENDAAMSCKQLDLNGFSWS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0659 419 Gene3D - 43 101 - -
Dere07g0659 419 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Dere07g0659 419 Coils Coil 145 165 - -
Dere07g0659 419 Pfam MYB-CC type transfactor, LHEQLE motif 143 189 IPR025756 -
Dere07g0659 419 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
Dere07g0659 419 FunFam Myb family transcription factor 43 101 - -
Dere07g0659 419 Pfam Myb-like DNA-binding domain 46 97 IPR001005 -
Dere07g0659 419 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Dere07g0659 419 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 301 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0659 Dere-ChrDere07 9708541 9711294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0659 76 419 G2-like Transcription Factor Family AT3G04030 51.585 4.33e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere07g0659 Myb_DNA-binding 3.7e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0924 08 13057155 13059236 Dere07g0659 07 9708541 9711294 CCT