Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0652 ATGCCACGCGGAAAGGAAAATTCTTCATCAGTTGCTAAGCCAGATGAACCTGAAAAGCAAATTGAATCTGATGAGAAAGTTGATTATGATGAGGCAAACGATGCTGAGGAAATGATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTAGAAGAGATAGAAGAGGAGGTGGAGGATGAGGAAGAGGAGGAGGAGGAGGAAGAGATTGAAGAAGTGGAAGATGATGATACCATGCAAAACCATAGCAGTGATGAGGCAAAGGTGGAAGATGGGGAAGAGAAGGAAGAGCACACTGAACTTCTATCTCTTCCTCCTCATGGTTCTGAAGTATATATTGGTGGTATTCCTCATGATGCCTCAATGGCAGATTTGAAGGCTTTTTGTGAGCCTATCGGGGAAGTTACAGAGGTTAGAATTATGAAGGGAAAAGACTCTGCTGAGAATAAGGGCTTTGCTTTTGTGACATTTAGAAATGTGGAACTGGCTTCTAAAGCCATTGATGAGCTGAATAATAAAGAATTTAAGGGAAAAAAAATAAAATGCTCAAAATCTCAAGCAAAACACCGTCTTTTCATTGGTAATGTTCCGAGAAGTTGGGGAGAGGAAGATCTGAGGAAGGTTGTGGCTGAGGTTGGGCCTGGAGTTACTACTGTTGAACTAGTCAAGGATTTGAAGAACACAAACAATAACCGTGGCTTTGCTTTTATTGATTATTATAACCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAACCCAAAATTTAAGCTAGGTGTCAATGCTCCAACTGTGAGCTGGGCTGACCCGAAAAATGCTGATTCTTCTGCTGCTTCTCAGGTGAAGGCAGTATACGTGAAAAACTTACCTAAGAATGTAACTCAAGACCAGTTAATCAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCTCCAGCAAAGTCTGGGCAGGAAAAGAACAGAATTGGTTTTGTACATTTTGCAGAGAGGACAAGTGCTATGAAAGCACTTAAAAACACCGAAAGATATGAATTAGAAGGTCAAGTTTTGGAATGCTCTCTGGCAAAGCCACAGGCTGATCAAAAGTCCGGAGGATCAAATATGCAGAAGTCAGGATTGCTTCCAAGTTATCCACCACGCATTAATTATGGTTTGGTTGGGGGTGCCTATGGTGCAGGATATAGTCCTGCAGCTCTTGCACAGCCCATGGTATATGGAAGGGGTCCAACTGCTGGTGAAATGGCCATGATGCCTATGCTTTTGCCCGATGGACGGATTGGATATGTCCTGCAACAACCAAGAGTGCAGCCACAAACCCCACCTGCACATCAGAGGGGTGGCAGGAATGGCGGTGGGAGTGGTAACAGGAGTGGTGGCAGTTCAAGTAAGGGAAGGCACAGCAATGATAGTGGCCAAGGGCGCAGATACCGGCCATATTAG 1461 0.436 MPRGKENSSSVAKPDEPEKQIESDEKVDYDEANDAEEMMEEEIEYEEVEEEEEVEEIEEEVEDEEEEEEEEEIEEVEDDDTMQNHSSDEAKVEDGEEKEEHTELLSLPPHGSEVYIGGIPHDASMADLKAFCEPIGEVTEVRIMKGKDSAENKGFAFVTFRNVELASKAIDELNNKEFKGKKIKCSKSQAKHRLFIGNVPRSWGEEDLRKVVAEVGPGVTTVELVKDLKNTNNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGVNAPTVSWADPKNADSSAASQVKAVYVKNLPKNVTQDQLIKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERTSAMKALKNTERYELEGQVLECSLAKPQADQKSGGSNMQKSGLLPSYPPRINYGLVGGAYGAGYSPAALAQPMVYGRGPTAGEMAMMPMLLPDGRIGYVLQQPRVQPQTPPAHQRGGRNGGGSGNRSGGSSSKGRHSNDSGQGRRYRPY 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0652 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Dere07g0652 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 357 IPR000504 GO:0003723
Dere07g0652 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Dere07g0652 486 SMART rrm1_1 193 265 IPR000504 GO:0003723
Dere07g0652 486 SMART rrm1_1 113 186 IPR000504 GO:0003723
Dere07g0652 486 SMART rrm1_1 287 360 IPR000504 GO:0003723
Dere07g0652 486 SUPERFAMILY RNA-binding domain, RBD 109 364 IPR035979 GO:0003676
Dere07g0652 486 CDD RRM_SF 114 186 - -
Dere07g0652 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 364 IPR000504 GO:0003723
Dere07g0652 486 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 193 273 - -
Dere07g0652 486 Gene3D - 193 272 IPR012677 -
Dere07g0652 486 Coils Coil 29 79 - -
Dere07g0652 486 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 275 384 - -
Dere07g0652 486 SUPERFAMILY RNA-binding domain, RBD 193 275 IPR035979 GO:0003676
Dere07g0652 486 MobiDBLite consensus disorder prediction 457 474 - -
Dere07g0652 486 MobiDBLite consensus disorder prediction 440 486 - -
Dere07g0652 486 MobiDBLite consensus disorder prediction 83 104 - -
Dere07g0652 486 MobiDBLite consensus disorder prediction 1 26 - -
Dere07g0652 486 FunFam RNA recognition motif-containing protein 21 192 - -
Dere07g0652 486 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 6 467 - -
Dere07g0652 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Dere07g0652 486 Gene3D - 3 192 IPR012677 -
Dere07g0652 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 274 IPR000504 GO:0003723
Dere07g0652 486 MobiDBLite consensus disorder prediction 27 82 - -
Dere07g0652 486 Gene3D - 273 398 IPR012677 -
Dere07g0652 486 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0652 Dere-ChrDere07 9639549 9643088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0652 112 368 Eukaryotic Initiation Factors Gene Family AT1G71770 24.345 4.15e-15 76.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0652 07 9639549 9643088 Dere07g0652 07 9639549 9643088 ECH