Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0612 ATGTCGTCGTCGTCTCATCCTCCGGGCCAGATCATTCACTCCATGAAACGACAACTCCCATTCTCGTCCATGAAGCCGCCCTTTGTTGCTCCGGCAGATTATCATCGCTTCGCTCCCGACCATCGTCCACCTGCTGACCAAGAAGCCGAGACCATCGTCGTCGCGTCCCCTCAATTGAAGCGGAAGAGTACCATGGCCAATTCTGAAGCTGATTCCGTTGATAGGATGAACCCAGGATCCACTGAAGCAGCTAATTGTCCATTTCAGACTCCGATATCAGGAAAAATGGGAAAGGCAAGCAAAGCCTCAAAGCTTACAAAATGCAGCAAAGCTGGACCGCAAACCCCAGGTTCAAATATTGGTTCTCCTTCTGGCAATAATCTTACTCCAGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTATTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGTCTCATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGATGTGTCAAGGCCAGGGGAGGCCGATGATAGTTTTGCTAGTTTGCAGACAGAAGTTGAAAACCTTACTATGGAGGAGCGCCAGTTAGATGAACAAATAAGGGAGATGAAAGAAAGACTGAGGGATCTTAGTGAAGATGAAAACAACCAGAAGTGCCTTTTTGTCACGAAGGATGATATAAAGGGCTTGCCCTGCTTCCAGAATGAAACCTTAATAGCTATTAAAGCTCCACATGGTACCACTCTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAAAGGAGATACAGGATTGTCCTCAGAAGCACAATGGGCCCGATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGAGTTGATGCAGCACCCAATCTTCCATCCAGTCCTGAGTTTAACAGCCATCCAGCAACAATGATCACTGAGGAAAGAGGGAAGGACAAGGAAATGCAGGGACAAGATGGTCAAAGAGCTTGTTCAGATTTGAGTGCCTCACAGGACTTCGTTAGTGGTATTATGAAGATTGTTCCGTCAGATGTTGATAGTGACGCTGATTACTGGCTTCTATCAAATACTGATGTTAGCATAACAGACATGTGGAGAACAGAACCCGGAATTGAATGGAACGAACTGGATGCACTTAATGAAGACTATTGCATGCCTCAGGTGGCCACACCACGACCTGAAACTCCTCCTTCAAACTCAAGTCAGGTGCGTTCTGCAGCTAAGCCTAATGGAGGCTGA 1368 0.4518 MSSSSHPPGQIIHSMKRQLPFSSMKPPFVAPADYHRFAPDHRPPADQEAETIVVASPQLKRKSTMANSEADSVDRMNPGSTEAANCPFQTPISGKMGKASKASKLTKCSKAGPQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQTEVENLTMEERQLDEQIREMKERLRDLSEDENNQKCLFVTKDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDAAPNLPSSPEFNSHPATMITEERGKDKEMQGQDGQRACSDLSASQDFVSGIMKIVPSDVDSDADYWLLSNTDVSITDMWRTEPGIEWNELDALNEDYCMPQVATPRPETPPSNSSQVRSAAKPNGG 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0612 455 MobiDBLite consensus disorder prediction 60 130 - -
Dere07g0612 455 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
Dere07g0612 455 MobiDBLite consensus disorder prediction 60 88 - -
Dere07g0612 455 MobiDBLite consensus disorder prediction 1 27 - -
Dere07g0612 455 Coils Coil 213 254 - -
Dere07g0612 455 Gene3D - 129 202 IPR036388 -
Dere07g0612 455 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Dere07g0612 455 MobiDBLite consensus disorder prediction 430 455 - -
Dere07g0612 455 FunFam E2F transcription factor 1 129 202 - -
Dere07g0612 455 CDD E2F_DD 211 317 IPR032198 GO:0046983
Dere07g0612 455 Gene3D - 207 317 - -
Dere07g0612 455 Coils Coil 151 171 - -
Dere07g0612 455 SUPERFAMILY E2F-DP heterodimerization region 214 317 IPR037241 -
Dere07g0612 455 PANTHER TRANSCRIPTION FACTOR E2F 76 414 IPR015633 GO:0000978|GO:0006357
Dere07g0612 455 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Dere07g0612 455 MobiDBLite consensus disorder prediction 107 130 - -
Dere07g0612 455 MobiDBLite consensus disorder prediction 437 455 - -
Dere07g0612 455 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0612 Dere-ChrDere07 9244651 9248844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0612 14 454 E2F-DP Transcription Factor Family AT5G22220 56.930 9.26e-165 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Dere07g0612 E2F_CC-MB 2.8e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0612 07 9244651 9248844 Dere07g0612 07 9244651 9248844 ECH