Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0596 ATGGCTTCCACGTACTTTCATGGCGGCAATTCTGAGATCCAATCCTCTGCGGATGGATTGCAGACACTTTACCTTATGAATCCATCCTACGTACCGTACTCTGACAGTACTACTCACCACTCCACGACCCCCAACATGCTCCTCCTCAATCCCAACACGAGTCCCGCCGGCAACGCGCTCAACCTCCCCAATCTCTCTCACGCGCCGCCGCCTTCCCACAATCAACACTTGCTTAGCGTTATTCCAACCAACATGGTCGGATCCGATAACTCTGAGATCACTGGCTTCCACGGCTTCACCGCCGCCGCAGCCGCCCCCCGTGTCCACTATAACTTGTGGGGTTCAGTAATTGATTCCCAACCACCGTCGTCGCCGGCAGCAACGACGCCTAGCAGTTCAGGTGGGGCGGCAACTGCCGGTTTCCGGAGGCCTAGTCAACAGGGCTTGTCACTGAGCCTCTCGTCCCAGCAGACAGCTTATAATAGGTCGCTTTCCGGCGAGCTCGACGTTCCGGGACAACGCCGAGTTTCCCCTATATCGCCAGCAAGCCATGTCGGCGGTGGCAATGATATGCAGATTCTGGGGAACTCTCCATCGTCGTCGTCGGTGTCGAACGGAATTTCGAGTATGATTTTGGGGTCAAAGTATCTCAAGGCAGCGCAAGAGCTTCTGGATGAAGTTGTAAATGTGGGAAAGGGGATTCAGAAAGGGGAATCGATGGAGATGCATGGGAGTAATAATAAAGAGAAGATGAGAGCGAATAGATCGGAATCGGAATCTGGGAATAATGGTGATGCTTCGAGTGGCGGTAAGCAAGCACCTGAACTCAGCACTGCCCAAAGACAAGAGCTTCAGATGAAGAAGTCCAAGCTTGTTTCGATGCTTGATGAGGTAGAGCAACGGTACAGGCAGTACCGCCACCAAATGCAGATAGTGATATCTTCATTCGAGCAGGCAGCGGGATATGGCGCAGCCAGATCATACACAGCCCTTGCCCTAAAGACAATATCGAAGCAATTTCGATGTCTTAAAGATGCAGTCTCTTCCCAAATCAATTCCACGAGCAAGAGCCTTGGTGAGGACGATTGCTTAGGAGCTAAGGTACAGGGTTCGCGGCTCCGGTACGTCGATCACCATCTCCGGCAACAGCGGGCTCTTCAGCAGCTCGGAATGATGCAGCACAACGCTTGGAGGCCTCAAAGAGGCTTGCCTGAACGAGCTGTCTCCATTCTTCGTGCTTGGCTTTTCGAGCACTTCCTTCACCCTTATCCTAAGGACTCCGATAAAGTGATGCTTGCAAAACAAACTGGACTTACTCGCAGCCAGGTGTCAAACTGGTTTATAAATGCTCGAGTTCGGCTATGGAAACCAATGGTAGAGGAAATGTATTTAGAAGAAACCAAAGAGCAGCAATTAGAGCAGAACAATGGATCCAGAAACAAGGACAACACCAATAGATCATCGAAAGAAACAAGCAAGGAAGCAAACAATGGTGCAGCACAAGAAGAATCAGGTTCCATGAACATTAGATCTTCATTTGATCAAATTAATGCTCTCCAATCCAAAACAGATGATCAAACCTTCAACATTAACCAAACCACCACTTCCCTACACGACATCTCAAATTCTCCTATGGGTGTTGGTAATGTTTCAATGGACGTGGAAATGAAGCCTCGCAATATTAAAGATGGGTACCCCTTAATAGGTGGTGAGGGTTATGGAGGATTCTCCATTCAAGACATTGGAAGGTTTAACGCTAGTAATGTTTCTGAACAGCAATTAGCTCCCAGGTTTCATGGGAATGGTGTTTCTCTCACATTGGGACTCCCACACAGTGACAACCTTCCTCTCTCCGCTACTCAACATGGCTTTCTCTCCCACAATATACATTTGGGAGCCAATAATGCAACTGATCAGTTCTGTGCTATCAACACTCCTCCATCTTCTCATTCAGGCGCAACCAGTTACGATAATATTGACATTCAGAACAGAAAGAGCTTCGCTGCCCAATTGTTGCCGGATTTCGTCACCTGA 2034 0.4902 MASTYFHGGNSEIQSSADGLQTLYLMNPSYVPYSDSTTHHSTTPNMLLLNPNTSPAGNALNLPNLSHAPPPSHNQHLLSVIPTNMVGSDNSEITGFHGFTAAAAAPRVHYNLWGSVIDSQPPSSPAATTPSSSGGAATAGFRRPSQQGLSLSLSSQQTAYNRSLSGELDVPGQRRVSPISPASHVGGGNDMQILGNSPSSSSVSNGISSMILGSKYLKAAQELLDEVVNVGKGIQKGESMEMHGSNNKEKMRANRSESESGNNGDASSGGKQAPELSTAQRQELQMKKSKLVSMLDEVEQRYRQYRHQMQIVISSFEQAAGYGAARSYTALALKTISKQFRCLKDAVSSQINSTSKSLGEDDCLGAKVQGSRLRYVDHHLRQQRALQQLGMMQHNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEETKEQQLEQNNGSRNKDNTNRSSKETSKEANNGAAQEESGSMNIRSSFDQINALQSKTDDQTFNINQTTTSLHDISNSPMGVGNVSMDVEMKPRNIKDGYPLIGGEGYGGFSIQDIGRFNASNVSEQQLAPRFHGNGVSLTLGLPHSDNLPLSATQHGFLSHNIHLGANNATDQFCAINTPPSSHSGATSYDNIDIQNRKSFAAQLLPDFVT 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0596 677 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 134 487 - -
Dere07g0596 677 SMART HOX_1 397 461 IPR001356 GO:0003677
Dere07g0596 677 MobiDBLite consensus disorder prediction 190 204 - -
Dere07g0596 677 MobiDBLite consensus disorder prediction 120 204 - -
Dere07g0596 677 Coils Coil 281 308 - -
Dere07g0596 677 SMART prehox3 205 349 IPR006563 -
Dere07g0596 677 MobiDBLite consensus disorder prediction 242 256 - -
Dere07g0596 677 MobiDBLite consensus disorder prediction 467 508 - -
Dere07g0596 677 MobiDBLite consensus disorder prediction 235 284 - -
Dere07g0596 677 ProSiteProfiles 'Homeobox' domain profile. 394 457 IPR001356 GO:0003677
Dere07g0596 677 Pfam Associated with HOX 210 348 IPR006563 -
Dere07g0596 677 MobiDBLite consensus disorder prediction 490 508 - -
Dere07g0596 677 Gene3D - 400 480 - -
Dere07g0596 677 MobiDBLite consensus disorder prediction 257 284 - -
Dere07g0596 677 SUPERFAMILY Homeodomain-like 398 463 IPR009057 -
Dere07g0596 677 CDD homeodomain 397 458 IPR001356 GO:0003677
Dere07g0596 677 FunFam BEL1-like homeodomain protein 9 400 462 - -
Dere07g0596 677 MobiDBLite consensus disorder prediction 120 164 - -
Dere07g0596 677 Pfam Homeobox KN domain 414 453 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0596 Dere-ChrDere07 9063513 9066923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0596 3 676 Homeobox Transcription Factor Family AT2G35940 44.708 1.44e-142 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Dere07g0596 POX 5.1e-50 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0880 08 12677782 12680866 Dere07g0596 07 9063513 9066923 CCT