Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0592 ATGGATGAAATTGAGGTTCCTCAGTATTTCGTGTGTCCCATTTCGTTTCAGATCATGAAGGACCCTGTGACAACATTCACGGGCATAACCTACGACAGAGAAAGCATCGAGCAGTGGTTGCTCAAGGCTAAAGTCCAAACCTGTCCTGTCACGAAGCAGCCATTGCCAAGAGGCTCTGACCTCACTCCCAACCACACCCTCCGCCGCCTAATCCAGGCTTGGTGCTCGGACAATGCCGCACACGGCGTCGATCGGATTCCCACCCCCAAATCCCCTCCCAGCAAGGACCTCCTCAAGAAGATTGTAGAGAACCTCAAACTTCCCCAACTGTACCAATCCGCATTGGAGAAACTGCATACTCTTGCCACAGAAAACCAGAGGAACCTGAGGCCCATGGTGGAATCCGGTGTGGCTGAGTCTATGATTCATCTCATTACAAACAAATTCAAGGAATTAGCAAACAACACTGATTCCCTCGAAGAAGCTCTGAGAATTCTACGCCTGCTCTGGAATAACAACCTCAAGCCTCTGCTTATCCAAAACATCGACTTCATCAAATCGTTGACTTCGATTCTACAGCTCCACGTGGACACCAACGTCAACATGATAAACGAAGCAATGCCTGTGTTAAAATCCGCCATCGAACTCGTAGATTCAACCCTTCTAGGAGGTTTAAAGCTCGAATTCTTCAGAGAAATCACAAGGGTACTTAAAAACCGAGAAATCTCACAGCAAGCCATAAAATCTGCCTTGCATGTTCTTATAGAAACGTGTCCTTTAGGGAGAAACAGAACGAGGATAGTGGAAGCAGGGGCAGTATATGAGCTAATCGAGCTTGAACTAGAGAAACCCGAGAAGAACATAACGGAGTTTATATTCAACCTTCTTGCGCAGCTATGTTCGTGTGCGGAAGGGAGGGAACAGTTTTTGCTACACGCGGCGGGGATTGCGGTGGTGGCGAAGAGGGTTCTGAGGGTGTCGCCGGCGACGGATGACAAAGCGGTTCATGTGTTGTGGCTGATAGCGAGGTTCTCGGGGTGGAACGACGTAGTTTCGGAGATGTTGAGGGTAGGAGCAGTGTCGATGCTTTGCATGGTGATTCAGGCGCACTGTGATACGAGTTTGAAAGAGAAAGCGAGAGGCATACTTAAGCTGCACTCCCAGGCTTGGAATAATTCTCCATGTATTCAAGTTTATCTCTTAACCAGGCACCAAAGGTGA 1221 0.4848 MDEIEVPQYFVCPISFQIMKDPVTTFTGITYDRESIEQWLLKAKVQTCPVTKQPLPRGSDLTPNHTLRRLIQAWCSDNAAHGVDRIPTPKSPPSKDLLKKIVENLKLPQLYQSALEKLHTLATENQRNLRPMVESGVAESMIHLITNKFKELANNTDSLEEALRILRLLWNNNLKPLLIQNIDFIKSLTSILQLHVDTNVNMINEAMPVLKSAIELVDSTLLGGLKLEFFREITRVLKNREISQQAIKSALHVLIETCPLGRNRTRIVEAGAVYELIELELEKPEKNITEFIFNLLAQLCSCAEGREQFLLHAAGIAVVAKRVLRVSPATDDKAVHVLWLIARFSGWNDVVSEMLRVGAVSMLCMVIQAHCDTSLKEKARGILKLHSQAWNNSPCIQVYLLTRHQR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0592 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Dere07g0592 406 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Dere07g0592 406 PANTHER WDSAM1 PROTEIN 3 397 IPR045185 GO:0061630
Dere07g0592 406 Gene3D - 97 392 IPR011989 -
Dere07g0592 406 FunFam RING-type E3 ubiquitin transferase 6 80 - -
Dere07g0592 406 CDD RING-Ubox_PUB 7 55 IPR045210 -
Dere07g0592 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Dere07g0592 406 SUPERFAMILY ARM repeat 109 384 IPR016024 -
Dere07g0592 406 SUPERFAMILY RING/U-box 3 84 - -
Dere07g0592 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0592 Dere-ChrDere07 9032752 9033972 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0592 2 403 U-box Gene Family AT3G11840 42.222 9.94e-103 310