Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0591 ATGGATGAAAAAATTGAAGTTCCTACCCATTTTCTCTGCCCCATTTCCTTGCAACTCATGAGAGATCCAGTGACAGTTTCTACAGGAATCACCTACGATAGAGAAAGTATAGAGAGATGGTTATTTTCCTGCAACAACACCACCTGCCCAGTCACTAAGCAATCACTCTCGGAGACACATCTTAATAATCTTATTCTTATCCCAAACCACACTCTACGAAAGTTGATTCAATCATGGTCTACCCTCAATGCCTCGTTTGGAATTGAACCTATTCCAACTCCAAAACCACTCCTTGAAAGCACCCACATCGCTAAGCTTCTCTTTGAAGCAGCCAGGTACCCGGAAAAGCAGCTCAAAAGCCTTAGACAGCTTCAATTTATAGCTTTCGAAAGTGAAAGAAACATGAACTGTTTAAAATCTGCAGGCGCAATAGAATTCTTGGCTTCAACCATGAAGAAAAGCAATAGTATTGAAGCAGGTGAAGTAGCCACTGAACTCTTGTTTCACCTAAACCCTTCTGAAACCCACCTAAGGAACCTCGTGGACAGCGAAAGCATTCAGTTTATTGAGTCCTTGGTTCAAATCTTAAGGCTTGGAAGCTACCAATCTCGAGCTCACGCGACTATGCTATTAAAATTAGCTTTCGAAGTGGCCAATCCAACCCAATTAGTCAGCGTTAGAACCGAACTCTTCGTGGAGCTCGCGCGAGTGCTTCGTGATCAGATCTCACAACATGCTTCAAAGGCTGCTTTAAAACTTGTTATAGAGCTGTGTCCATGGGGGAGAAACCGAATAAAGGCCGTTGAAGGTGGTTTAGTTTTTGCCTTAATTGAGCTTCTTATTCTTATCAGTGAAAGAAGGTTGTGCGAGTTGATGCTAATAGCTTTGGATCAACTTTGTGGTTGCGCCGAAGGAAGGGCGGAGTTGGTGAGTCATGGCGGAGGTGTGGCCGTTGTGGCGGGGAAGATTCTGAGGGTTTCTCATGTGGGAAGTGATAAAGGGGTTAGAGTTTTGGCCTCCATTTGTAGGCATTCAGGTACTCCTAGGGTTCTTCAGGAGATGCTGCAAGTTGGGGGTGTGACCAAGTTGTGTTTAGTGGTTCAAGTGAATCATGGGAGTTTGAGGACTAAGGAGAGGGCCAAGGAGGTTCTTAGGTTGCACTCTGGGGTTTGGAAGAATTCCCCATGTATTCCTTTACCTCTTATTTCATCCTATCCATGA 1221 0.4447 MDEKIEVPTHFLCPISLQLMRDPVTVSTGITYDRESIERWLFSCNNTTCPVTKQSLSETHLNNLILIPNHTLRKLIQSWSTLNASFGIEPIPTPKPLLESTHIAKLLFEAARYPEKQLKSLRQLQFIAFESERNMNCLKSAGAIEFLASTMKKSNSIEAGEVATELLFHLNPSETHLRNLVDSESIQFIESLVQILRLGSYQSRAHATMLLKLAFEVANPTQLVSVRTELFVELARVLRDQISQHASKAALKLVIELCPWGRNRIKAVEGGLVFALIELLILISERRLCELMLIALDQLCGCAEGRAELVSHGGGVAVVAGKILRVSHVGSDKGVRVLASICRHSGTPRVLQEMLQVGGVTKLCLVVQVNHGSLRTKERAKEVLRLHSGVWKNSPCIPLPLISSYP 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0591 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Dere07g0591 406 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Dere07g0591 406 Gene3D - 98 393 IPR011989 -
Dere07g0591 406 SUPERFAMILY RING/U-box 4 83 - -
Dere07g0591 406 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Dere07g0591 406 CDD RING-Ubox_PUB 8 61 IPR045210 -
Dere07g0591 406 SUPERFAMILY ARM repeat 113 383 IPR016024 -
Dere07g0591 406 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Dere07g0591 406 FunFam RING-type E3 ubiquitin transferase 7 85 - -
Dere07g0591 406 Pfam U-box domain 7 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0591 Dere-ChrDere07 9021983 9023441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0591 1 406 U-box Gene Family AT2G35930 51.090 1.81e-144 415