Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere07g0571 | ATGTCGATAAAACTTTCGCATTCCCTAAATCGCTCTTCAAGACTTCATTCTCGAAGCATATCAGCATCTCCCTCTCTACGCACTGTACTAGTGTTGAAGCCTCGAAGGATTGAAGTAAATTGCGTCTGTGGTTTGGTCTCCGTCTCGCTTCTTGGTTCACCATTCGCCATGTCTGACTTTCATGCAAGCGACCATTTTGCCGTGGGCAAAACCCTACGATACCCTCCCAAGTTGAAACTGCTCTCGCCTTTTCGTGAAAATGGTGAGTTAGGGGTTCTTGCTGCTTCTCTCTCTACATTGTTCTTGAAACAGTTGGGAAAGAAATCGGATATACGGAAGTGGTTTATGAAATCCCATGACAAGAGCAATGCTACGGAGCCGAAGCCTACGAATCAGGCAAAGCCTTCTCCAGCTAAACCACAGCCGGAAAAACCAGTAGCCGAAGGCCAAGAAAGTTCAGGGAGGAGGAAAACTAGCAAATATTTTGCCACTGACAAAAACAAGCCCAAAGATGAAAAGGAGTCACAGGAGCTCCCTGCTAAAAGAAAGAATCCTAAGGACAGTGAGGAATTGCAGAAGCCTCCTCCTAAAAAAGTTCATTTAGATGAAGATGATGATGTTGCCTTTCTCACATCTAAAGAGAAAGCAGCTGATACCACCCCAACAAAAAAATCAAAGAGTGGGTCAGGTAGGGGAATTCCACTGAAATCTCCAGATTTGCAAGAAAGTGATGAGGATGATGATAAAGATGCTGTCTCACCCATTAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCTGCACAATCATCTGGTGGACGAGGTAGAGGGGGTGGAAGGGGTGGATTTATGAATTTTGGAGAAAGAAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCCGAAGGTGCTCCTGATTGTTTGGCTGGTTTGACTTTTGTAATAAGTGGGACATTGGACAGTTTGGAACGAGAAGAAGCGGAAGGTTTGATTAAACGACATGGTGGCCGTGTCACTGGATCAGTCAGCAGAAAAACGAATTATCTTTTATGTGATGAAGATATTGGGGGTCGAAAATCTTCGAAAGCCAAAGAGCTGGGTACTGTCTTCCTCACTGAGGATGGGTTGTTTGACATGATTCGTGCATCAAAACCTGCAAAAGCTCCTTCGCAAGAAGAATCGAAAAAAGTGGAGAGGAAGGTTGTTACAACCCAGTCCAAAAGTCCTAAAAAAGCTGGGGTCAAGGTCTCCCAATCTTCAGGCTCAGCTTCTACCCCAGCAAAGCCTAAGGCAGAAAGTTCTGTGAGGTCTTCTTTTATGTGGACAGAGAAGTATCGACCTAAGGTTCCAAATGACATCATAGGAAATCAGTCACTTGTTAAACAGCTTCATGATTGGTTGGCACATTGGAATGAGCAATTTCTTGATAGTGGAAATAAAAAAAGGGGGAAAAGACAAAATGACACTGGTTCCAAAAAAGCCGTCTTGTTAAGTGGAACCCCTGGCATAGGAAAAACCACTACAGCAAAGTTGGTCAGTCAGATGCTTGGTTTCCAAGCCATAGAGGTTAATGCTAGTGATAACCGTGGGAAGGCTGATAGCAAAATTGTTAGAGGAATCAGTGGAAGTAATGCAAACTCTATAAAGGAACTTGTCACCAATGAGGCCCTGGGTGCTAATATGGATTGTGCAAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGCATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGTATCAAGATATCAAAAATTCCTATCATCTGCATTTGTAATGACCGCTACAGCCAGAAACTGAAGAGTCTTGTGAACTACTGTCTGCTTCTTAGCTTTCGTAAACCTACAAAGCAACAGATGGCAAAGAGGTTGATGCAAGTTGCCAAAGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAGCTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAATCAGTTACACTATATGAGCCTCTCCATGTTAGTTATTAACTATGATGACATTAGGCAGCGCCTTCTATCTAGCTCAAAGGATGAAGATATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGCTTAAATGCTGGGAAGTTAAAAATGGATGAGAGGATTAACCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTGTTCAGGAAAACTATATTAATTATAGACCAAGCTTGGCTAGTAAGGATGACAATGATATGAAGCGCATGAAGTTAATTGCTTGTGCTGCTGAGTCTATTGCTGATGGAGATATAGTGAATGTGCAGATTCGAAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTTCTCTTGCATCAAGCATAATTCCTGCTTCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAGCGGAATTATAATCGGTTTGGTGGCTGGCTAGGGAAGAACTCAACAATGGGCAAAAACACGAGGCTTTTGGAAGATCTCCATGTTCACATTCTTGCTTCACGTGAATCTAGTTCAGGAAGGGAAACCCTCCGTTTGGAATATCTTATGCTGCTTCTTAAACAATTGACAGAACCACTGCGTGTCTTGCCTAAGGATGAAGCTGTTCAGAAAGTTGTGGAATTTATGAATACATACTCAATCAGTCAGGAGGATTTTGATACTATTGTAGAGTTATCAAAATTCAAGGGTCATCCAAATCCACTAGATGGCATACAGCCTGCTGTTAAATCTGCACTTACAAAAGCATACAAAGAAGAAAGCAAATCTCGGATGGTTCGAGCTGCAGATCTAGTTACTCTTCCTGGAATGAAAAAGGTCCCCAAGAAGCGAATTGCTGCTATCCTGGAACCAGCTGATGAAGGACTGGAACAGGGGGAAGGTGACACCCTGGAAGAGAGTGGAGAAGAGAATTCCTCGGACACACAGGAGTTGGACGGTACAACCATTGGTGAGAAGCTGCAGTCTGAACTTCAAAGTTTAAATTCCGAGGCCATGCAAGTACAGTTGGATTTGAAGGGAGCAGGAAATTCAAGGGCCAAGAAGACTCCAGCTGGAAGAGGTAAAGGTGCTTCTGCATCCGCAGAGAAGGGTGGGCAAGCTTCAAGAGGTGCGGCAAAAAGAAAGAGTTACTATTTCTTCTTTATTCCTCCTGTGAGGATTTTTGTGAGGGCATGA | 3216 | 0.4353 | MSIKLSHSLNRSSRLHSRSISASPSLRTVLVLKPRRIEVNCVCGLVSVSLLGSPFAMSDFHASDHFAVGKTLRYPPKLKLLSPFRENGELGVLAASLSTLFLKQLGKKSDIRKWFMKSHDKSNATEPKPTNQAKPSPAKPQPEKPVAEGQESSGRRKTSKYFATDKNKPKDEKESQELPAKRKNPKDSEELQKPPPKKVHLDEDDDVAFLTSKEKAADTTPTKKSKSGSGRGIPLKSPDLQESDEDDDKDAVSPIKSGGRGRGGRGASAQSSGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEGLIKRHGGRVTGSVSRKTNYLLCDEDIGGRKSSKAKELGTVFLTEDGLFDMIRASKPAKAPSQEESKKVERKVVTTQSKSPKKAGVKVSQSSGSASTPAKPKAESSVRSSFMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGNKKRGKRQNDTGSKKAVLLSGTPGIGKTTTAKLVSQMLGFQAIEVNASDNRGKADSKIVRGISGSNANSIKELVTNEALGANMDCAKHSKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMQVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMLVINYDDIRQRLLSSSKDEDISPFTAVDKLFGLNAGKLKMDERINLSMSDPDLVPLLVQENYINYRPSLASKDDNDMKRMKLIACAAESIADGDIVNVQIRRYRQWQLSQASSLASSIIPASLLHGQREILEQGERNYNRFGGWLGKNSTMGKNTRLLEDLHVHILASRESSSGRETLRLEYLMLLLKQLTEPLRVLPKDEAVQKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEESKSRMVRAADLVTLPGMKKVPKKRIAAILEPADEGLEQGEGDTLEESGEENSSDTQELDGTTIGEKLQSELQSLNSEAMQVQLDLKGAGNSRAKKTPAGRGKGASASAEKGGQASRGAAKRKSYYFFFIPPVRIFVRA | 1071 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 288 | 303 | - | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 968 | 986 | - | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 1018 | 1047 | - | - | |
| Dere07g0571 | 1071 | CDD | AAA | 489 | 592 | - | - | |
| Dere07g0571 | 1071 | FunFam | Replication factor C subunit 1 | 629 | 700 | - | - | |
| Dere07g0571 | 1071 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 700 | 845 | IPR008921 | GO:0003677|GO:0006260 | |
| Dere07g0571 | 1071 | Pfam | BRCA1 C Terminus (BRCT) domain | 306 | 381 | IPR001357 | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 407 | 439 | - | - | |
| Dere07g0571 | 1071 | Pfam | ATPase family associated with various cellular activities (AAA) | 496 | 595 | IPR003959 | GO:0005524|GO:0016887 | |
| Dere07g0571 | 1071 | SMART | AAA_5 | 492 | 630 | IPR003593 | GO:0016887 | |
| Dere07g0571 | 1071 | CDD | HLD_clamp_RFC | 629 | 687 | - | - | |
| Dere07g0571 | 1071 | Gene3D | - | 440 | 628 | IPR027417 | - | |
| Dere07g0571 | 1071 | PIRSF | RFC1 | 106 | 1031 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 478 | 497 | - | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 119 | 306 | - | - | |
| Dere07g0571 | 1071 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 440 | 689 | IPR027417 | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 963 | 992 | - | - | |
| Dere07g0571 | 1071 | FunFam | Replication factor C subunit 1 | 701 | 810 | - | - | |
| Dere07g0571 | 1071 | FunFam | Replication factor C subunit 1 | 440 | 628 | - | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 149 | 221 | - | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 385 | 439 | - | - | |
| Dere07g0571 | 1071 | FunFam | Replication factor C subunit 1 | 280 | 383 | - | - | |
| Dere07g0571 | 1071 | Gene3D | - | 629 | 699 | - | - | |
| Dere07g0571 | 1071 | CDD | BRCT_RFC1 | 304 | 382 | - | - | |
| Dere07g0571 | 1071 | MobiDBLite | consensus disorder prediction | 389 | 406 | - | - | |
| Dere07g0571 | 1071 | Pfam | Replication factor RFC1 C terminal domain | 769 | 931 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Dere07g0571 | 1071 | Gene3D | BRCT domain | 281 | 383 | IPR036420 | - | |
| Dere07g0571 | 1071 | Coils | Coil | 997 | 1017 | - | - | |
| Dere07g0571 | 1071 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 120 | 1037 | - | - | |
| Dere07g0571 | 1071 | ProSiteProfiles | BRCT domain profile. | 304 | 385 | IPR001357 | - | |
| Dere07g0571 | 1071 | Gene3D | - | 701 | 810 | - | - | |
| Dere07g0571 | 1071 | SUPERFAMILY | BRCT domain | 304 | 385 | IPR036420 | - | |
| Dere07g0571 | 1071 | SMART | BRCT_7 | 306 | 384 | IPR001357 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere07g0571 | 109 | 1009 | Core DNA Replication Machinery Family | AT5G22010 | 69.660 | 0.0 | 1148 |