Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0547 ATGGAATGGAGCAGAGGCCTCACCTTAGGCCACGGCTCCTCCGCCACCGTCTCCCTCGCCACCTCCTCCCAGTCCGGCCATGTCTTCGCCGTTAAGTCAACGGATCTTTCTCGATCCGAGTCGTTACAGAGAGAGCAGAGTCTCCTGTCTGCTTTATCTTCTCCTTACATAGTCACCTACAAAGGGTGCGACATTACTAGAGAGAAAAACAAGCCCTTTTTCAATCTCTTCATGGAGTACATGCCCTTTGGGACTATTCTTCAAGCGGTCCGCCGGCACGGCGGCCGGCTTGACATGGCGGCGGTCGGGTACTACACATGGCAGGTGTTGCAGGGGCTGGAGTATTTACATTCGAATGGGTTGGTACATTGTGACATTAAGAGCACCAACATATTGATAGGTGAAGATGGAGCGAAGATTTCAGACTTTGGATGCGCCAAGCGGGTTGCTGACGCGGCGGCGCCGATCAGCGGGACGCCGATGTTTATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTATGCTTGTGATATTTGGGCACTTGGGTGTACCGTGATCGAAATGGCTTCTGGAGTTTCGCCGTGGCCGAATGTGGCCGACCCTTTTGCGGTTCTTCACCTGATCGCATATTCCGGCGAGTCGCCGGGGATTCCGGGGTTCCTACAGGAGGAAGCAAAGGATTTCTTGGAGAAGTGCTTGAGGAGGAATCCGAAAGAGAGGTGGACGGCTACTCAACTGTTAAAGCATCCATTCGTTGCGGAATTCAATTCCAAATCCAATGCGAAGGAAATTCAAGAATCCAATTCAAGTTCACCCACAAGCATACTTGACCAGGGGTTTTGGAATTCCATGGAAGAATCAGAAAGCCCTGGAAATCTGATTCGCACAAGGTTTGAAATCTCAGGTGCCGAGAGGATCAGAGGTTTAGCTGAGTTTTCAGGTGAACCCAGATGGGAATGTGACGAGAATTGGATCACAATCAGAGAGAGAGACGAAGCTGATGCTTCAACTAGTGATGATTGTTTGGAAGAGTGGGCGAAAAGCAAAGTTAGAAGTAGAATTAGTGGGTGTTTTAGTGAGAATTACAGATGTAGGGAGATTAGTGATGTGATTAGTACTGTCAACAATTTTGAGAGAGGCATTGATAAGTTGCTACACCCTTCAATGTCAGTTTTTTTATGA 1185 0.4962 MEWSRGLTLGHGSSATVSLATSSQSGHVFAVKSTDLSRSESLQREQSLLSALSSPYIVTYKGCDITREKNKPFFNLFMEYMPFGTILQAVRRHGGRLDMAAVGYYTWQVLQGLEYLHSNGLVHCDIKSTNILIGEDGAKISDFGCAKRVADAAAPISGTPMFMAPEVARGEEQGYACDIWALGCTVIEMASGVSPWPNVADPFAVLHLIAYSGESPGIPGFLQEEAKDFLEKCLRRNPKERWTATQLLKHPFVAEFNSKSNAKEIQESNSSSPTSILDQGFWNSMEESESPGNLIRTRFEISGAERIRGLAEFSGEPRWECDENWITIRERDEADASTSDDCLEEWAKSKVRSRISGCFSENYRCREISDVISTVNNFERGIDKLLHPSMSVFL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0547 394 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 287 - -
Dere07g0547 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Dere07g0547 394 Gene3D Transferase(Phosphotransferase) domain 1 2 300 - -
Dere07g0547 394 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g0547 394 SUPERFAMILY Protein kinase-like (PK-like) 7 284 IPR011009 -
Dere07g0547 394 CDD STKc_MAPKKK 2 253 - -
Dere07g0547 394 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Dere07g0547 394 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g0547 394 Pfam Protein kinase domain 8 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g0547 394 FunFam Mitogen-activated protein kinase kinase kinase 17 2 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0547 Dere-ChrDere07 8467346 8468530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0547 3 344 MAP Kinase Kinase Kinase AT5G55090 47.778 1.21e-105 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Dere07g0547 Pkinase 5.4e-55 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0856 08 12324700 12325896 Dere07g0547 07 8467346 8468530 CCT
Dere07g0547 07 8467346 8468530 Dere07g0547 07 8467346 8468530 ECH