Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0544 ATGGAACTTCGTTCTCGCAGACGACTTTCTAGTCCTAAAATTGATGGAACTGAACAACAACCCAGGGATGCCTCTGGGGAAGCTAAAACTGCTGGCAATTGCAGCAATGATACAGATGGAGAAGTTCTTGTTAAATCTTCAGATTCAGATTCTAATTATGGAGATGATGACGTGGTGAACTACCTTTTTGACTTAAAAGAAGATCCTACTTCAAGCGTTTGTGCTTCTGATGGAGAAGACAACGCCTCTGATTCATCTGATAGCTGCAAGCCTTCATCTAGAAAGAGAAGAATTGTGCACTCCAGAAGGAAAAGGAGACCAATCGGCTCAAAATATGGAGAGTCCAGTCAGGAAGTGGGAGTGTTGGAGCATGGAGAAAATGATGACTTCCCAATGGTTCAGCAGCAATTATTTGACCATGTTTTGGTTGTGAAAAGGAAGAAAAATACAAAAAGAGCAAGAAATGAAGATTCTCGGCCATTGCTGTTGTGGAATGTGTGGGAAGAGCAGCATGAGAGATGGATTGATGAGAATTTATCAGAAGATGTTGACTTGGATCATCAGAATGAACTAATGAATGAAACTGCCGAGCCATCCTCTGAACTTACAATGCCTTTACTAAGATACCAAAAGGAATGGCTGGCATGGGCTCTGAAACAGGAGAATTCTGCAATTAGAGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCTCTTGTCCTTGCCAAACGGGAAATCCAGCCAATGGTATGTGAACCAGACGAACCCTCATCTTTGCCAGGTTCATCTACAGTCTTGCCTCCCATCAAAGGAACACTTGTAATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATAGGTTTACTTTGAAAGGAAGCACTAAGGTGCTGGTTTATCATGGGGCCAAGAGAGGGAAGAGTAGTGAACAGTTCTCGGAGTATGATTTTGTAATTACTACGTACTCTATTGTTGAGTCTGAGTACAGGAAGTATATGATGCCTCCTAAGGAGAAGTGCCCATATTGTGGCAAATTGTTTAACCACAAGAAGTTATCTATTCACCAGAAATACTTTTGTGGGCCTGATGCTAGGAGAACAGACAAACAATCAAAGCAACATAAGAAAAAGAAAAGAGAAGTTAATAAAAAGAAGATCAAGGAACATGAAAGTGCTGAAGATCAGGGAGCTCACAAGAAGATTCCAATGTGTTGGAGTGAAGAATTGGAGAAGGGTTTTAACAGATTAAAAGAAAAGGAAATGAACGTGAGAGTAGACAATTCAGATGCCATGAGCAGGGAGAAGTCACTTTTACATGCTGTAAAGTGGCAGCGGATCATATTGGATGAGGCACACTACATAAAATCTAGACATTCTAACACTGCAAAAGCAGTCCTTGCTCTACAATCGTTCTATAGATGGGCATTAAGTGGCACTCCTCTTCAGAATCGTGTGGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAGTTCCTTATTCCTATTATTTGTGCAAGGACTGTGATTGCAGGACTCTTGATCATAGTGCCTCTAAAGAATGTTCAAACTGCCAGCACAGTTCTGTCAGACATTTCTGTTGGTGGAATAAATACGTAGCCACACCAATTCAATTACATGGAAACGGAGATACTGGGAGAAGAGCTATGATATTGCTTAAATACAAGGTTTTAAAGAACATAGTCCTAAGACGCACTAAAGTAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATAGTTTCATTGAGAAAAGATAGCTTGGATATAAAAGAGCAAGACTATTATGAATCATTATACAATGAAAGTCAGTCGCAGTTTAATACATATGTTGAATCAAATACTTTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGGCTGCGACAAGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAACTGCATCATCAAGAGGTGGAGCTGAGGTTAGCAATGGCAGTGTTGAACAAGTATGTGGCCTTTGTCATCACCCAGTAGAAGATCCTGTGGTTACCTCATGTGAGCACATGTTTTGCAAGGCGTGCTTGATAGACTTCTCTGCTTCCTTGGGACGAGTATCATGCCCTTCGTGCTCTACTTTACTTACAGTTGATTTAACTTCCAATGAGGATGTTGGGGATCAGTCTAATAAAACAACAATTAAGGGTTTCAGATCCTCGAGCATTTTAAACAGAATTCGGCTTGAGAACTTTCAGACTAGCACTAAAATAGAGGCTTTGGTCATGAAGATGAATGGGCAACGTTGTGCCTTAGAAAAACTGAGTAGTTTCTGCAAAATTAGCATGTGCCCAGGTGATATTGAGCCAACAATATCTGTGAAGTTTTTGGGCCCTGATGACATTGAGCCAGCAAGATCTGTGAAGTACTGTTTTGATGGAATTGATGCAACAGCAATTCTAGCTTCTTGGAGTGATACTTGTTACTCTTTTCACAGAGAAGAGATTAGATTTATGGTTGAAAGGGACGGTTCAGCAAAAGGGATTGTTTTTAGTCAGTTCACATCATTCTTGGATCTCATAAACTACTCCCTGCTCAAGTCTGGTGTGTCTTGCGTTCAATTGAATGGAAGCATGTCATTGGCTGCACGGGATGCTGCCATTAAGAAATTCACTGATGATCCTGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGAGGTGTTGCTCTTAATTTGACAGTAGCATCTCATGTTTTCCTTATGGACCCTTGGTGGAACCCAGCGGTGGAGCGCCAGGCTCAAGACAGAATTCATCGTATAGGGCAATATAAACCAATCAGAATTGTCAGGTTTGTCATTGAAAACACTATTGAGGAAAGGATTTTGAAGCTGCAAGAAAAGAAGGAACTAGTATTTGAAGGGACTATAGGCGGCTCCGCTGATGCCCTGGGGAAATTGACGGAGGCAGACATGAAATTTCTGTTTGTTACCTGA 3009 0.4131 MELRSRRRLSSPKIDGTEQQPRDASGEAKTAGNCSNDTDGEVLVKSSDSDSNYGDDDVVNYLFDLKEDPTSSVCASDGEDNASDSSDSCKPSSRKRRIVHSRRKRRPIGSKYGESSQEVGVLEHGENDDFPMVQQQLFDHVLVVKRKKNTKRARNEDSRPLLLWNVWEEQHERWIDENLSEDVDLDHQNELMNETAEPSSELTMPLLRYQKEWLAWALKQENSAIRGGILADEMGMGKTIQAIALVLAKREIQPMVCEPDEPSSLPGSSTVLPPIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKRGKSSEQFSEYDFVITTYSIVESEYRKYMMPPKEKCPYCGKLFNHKKLSIHQKYFCGPDARRTDKQSKQHKKKKREVNKKKIKEHESAEDQGAHKKIPMCWSEELEKGFNRLKEKEMNVRVDNSDAMSREKSLLHAVKWQRIILDEAHYIKSRHSNTAKAVLALQSFYRWALSGTPLQNRVGELYSLIRFLQIVPYSYYLCKDCDCRTLDHSASKECSNCQHSSVRHFCWWNKYVATPIQLHGNGDTGRRAMILLKYKVLKNIVLRRTKVGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQSQFNTYVESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTASSRGGAEVSNGSVEQVCGLCHHPVEDPVVTSCEHMFCKACLIDFSASLGRVSCPSCSTLLTVDLTSNEDVGDQSNKTTIKGFRSSSILNRIRLENFQTSTKIEALVMKMNGQRCALEKLSSFCKISMCPGDIEPTISVKFLGPDDIEPARSVKYCFDGIDATAILASWSDTCYSFHREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLAARDAAIKKFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSADALGKLTEADMKFLFVT 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0544 1002 Pfam Helicase conserved C-terminal domain 847 946 IPR001650 -
Dere07g0544 1002 MobiDBLite consensus disorder prediction 70 119 - -
Dere07g0544 1002 Coils Coil 383 403 - -
Dere07g0544 1002 CDD SF2_C_SNF 846 957 - -
Dere07g0544 1002 Gene3D - 834 1000 IPR027417 -
Dere07g0544 1002 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 54 1000 - -
Dere07g0544 1002 Pfam SNF2-related domain 220 654 IPR000330 GO:0005524|GO:0140658
Dere07g0544 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 579 IPR027417 -
Dere07g0544 1002 MobiDBLite consensus disorder prediction 392 406 - -
Dere07g0544 1002 ProSiteProfiles Zinc finger RING-type profile. 677 717 IPR001841 -
Dere07g0544 1002 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 506 IPR014001 -
Dere07g0544 1002 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 828 992 IPR001650 -
Dere07g0544 1002 Gene3D - 208 348 IPR038718 -
Dere07g0544 1002 ProSitePatterns Zinc finger RING-type signature. 692 701 IPR017907 -
Dere07g0544 1002 Gene3D - 377 598 IPR038718 -
Dere07g0544 1002 SMART helicmild6 863 946 IPR001650 -
Dere07g0544 1002 SMART ring_2 677 716 IPR001841 -
Dere07g0544 1002 MobiDBLite consensus disorder prediction 372 406 - -
Dere07g0544 1002 MobiDBLite consensus disorder prediction 74 88 - -
Dere07g0544 1002 SUPERFAMILY RING/U-box 674 721 - -
Dere07g0544 1002 CDD DEXDc_SHPRH-like 206 579 - -
Dere07g0544 1002 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 1000 IPR027417 -
Dere07g0544 1002 MobiDBLite consensus disorder prediction 1 55 - -
Dere07g0544 1002 SMART ultradead3 202 524 IPR014001 -
Dere07g0544 1002 MobiDBLite consensus disorder prediction 14 49 - -
Dere07g0544 1002 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 772 IPR013083 -
Dere07g0544 1002 Pfam Zinc finger, C3HC4 type (RING finger) 677 716 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0544 Dere-ChrDere07 8448754 8458095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0544 108 765 RAD5 or RAD16-like Gene Family AT1G05120 59.517 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere07g0544 SNF2_N 3.9e-48 CL0023