Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0518 ATGCCTGCCGGGATAATGATTCCGGCGATAAACATGCCCTCGATGATTGGAAGGAATAACAACGTTGGTGGTGGGTTTGGATCATCCTCAGGCCTTACTCTTGGTCAGCAGCCAAACATGATGGAAGGTCAGCTCCACGCAGTACTGGACATGGCTCCCAAGACATCGGAGAGCGACATCCCTCGAATCCGAGACGACGACTTCGACACCGCCACCAAGTCGGGAAGCGAAAACCAGGAAGGCGGCGCCTCCGGCGACGACCAAGATCAACGTCCCAAGAAGAAGCGTTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGCCCACACCCAGATGACAAGCAAAGGAAGGAGTTGAGTCGTGAACTAGGGTTGGAGCCCTTGCAAGTCAAGTTCTGGTTCCAAAATAAGCGCACCCAGATGAAGACCCAACATGAGCGGCATGAGAATTCACACCTTCGAGCCGAAAATGATAAGCTTCGTGCGGATAACATGAGGTACAGAGAAGCTCTTGGCAATGCCTCCTGTCCTAATTGTGGTGGACCTACAGCGATAGGAGAGATGTCCTTCGATGAGCATCATTTGAGACTCGAAAATGCCCGCCTAAGGGAAGAGATTGATAGAATTTCAGCAATTGCTGCAAAGTACGTAGGGAAGCCAGTGGTGAACTATCCACTGCTATCACCATCTTCGGTAGCATCTCGTCCCTTAGAAGTTGGGGTTGGTGGTGGTTATGGTGGACAGGCAGGGATTGGTGGGGACATGTATGGAGCCGGAGATCTTTTGAGGTCGATAAGCGGACTCACCGAAGCCGATAAGCCGATGATAATTGAGCTGGCTGTTGCGGCTATGGAGGAACTTGTGGGAATGGCTCAGATGGGTGATCCTCTTTGGATGACCACCCTTGATGGCTCCGCAACTGTGCTCAACGAAGACGAATACGTCAGGTCTTTTCCTCGAGGAATAGGTCCTAAACCCACTGGCATGAAATGTGAAGCTTCACGAGAAACTACTGTTGTCATCATGAACCATATCAACCTCGTCGAGATTCTCATGGATGTGAACCAATGGTCGACGGTGTTCTCTGGTATAGTTTCAAGAGCAATGACCATGGAAGTACTATCAACAGGAGTGGCTGGGAACTACAACGGTGCCTTGCAAGTGATGACAGCAGAGTTCCAAGTGCCTTCACCCCTCGTACCAACTCGAGAGAGTTACTTCGTGAGGTATTGTAAACAGCACGCTGACGGGACTTGGGCAGTAGTAGATGTGTCTTTGGATAATCTGCGTCCATCCCCTTCTATGAGATGTAGAAGACGACCTTCTGGTTGCTTAATCCAAGAAATGCCCAATGGCTATTCAAAGGTGACGTGGATTGAACATGTAGAAGTCGATGAAAGAGGAGTACATAGTCTATACAAGCAGCTCGTAAGTTCAGGGCATGCCTTTGGGGCAAAACGTTGGGTTGCAACGTTGGATCGACAGTGTGAAAGGCTTGCTAGTGCTATGGCGTCCAACATTCCCACTGGTGATGTTGGGGTGATAACAAACCAAGATGGGAGGAGGAGTATGTTGAAGCTGGCAGAGAGAATGGTGATAAGCTTCTGTGCTGGAGTGAGCGCTTCTACTGCTCACACGTGGACCACACTCTCGGGAACCGGGGCGGATGATGTACGGGTCATGACCCGAAAGAGTGTGGACGACCCCGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCAACCTCTTTTTGGCTTCCTGTTCCTCCAACGAGAGTTTTTGATTTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGGGTGGTCCAAGAAATGGCACACATAGCTAATGGACGAGATACAGGAAACTGTGTGTCCCTTCTTCGAGTGAATAGTGCCAATTCGAGCCAAAGCAATATGTTGATATTACAAGAAAGCTGCACAGACTCAACGGGCTCTTTCGTTATATATGCTCCTGTAGATATAGTAGCCATGAACGTAGTTCTAAATGGAGGTGACCCTGACTATGTGGCACTGCTTCCTTCTGGGTTTGCTATCCTCCCCGATGGTACCACTGCTCATGGAGGTGGCATTGGTGAAACAGGCCACGGTGGCTCCCTCTTGACCGTTGCTTTTCAAATCTTGGTTGATTCGGTTCCAACGGCAAAGCTCTCTCTTGGATCTGTTGCTACTGTCAATAACCTTATTGCCTGCACTGTTGAGAGAATCAAGGCCTCTTTATCTTGTGAAGCTGCTTGA 2295 0.4976 MPAGIMIPAINMPSMIGRNNNVGGGFGSSSGLTLGQQPNMMEGQLHAVLDMAPKTSESDIPRIRDDDFDTATKSGSENQEGGASGDDQDQRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENSHLRAENDKLRADNMRYREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSPSSVASRPLEVGVGGGYGGQAGIGGDMYGAGDLLRSISGLTEADKPMIIELAVAAMEELVGMAQMGDPLWMTTLDGSATVLNEDEYVRSFPRGIGPKPTGMKCEASRETTVVIMNHINLVEILMDVNQWSTVFSGIVSRAMTMEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSMRCRRRPSGCLIQEMPNGYSKVTWIEHVEVDERGVHSLYKQLVSSGHAFGAKRWVATLDRQCERLASAMASNIPTGDVGVITNQDGRRSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPTRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGETGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0518 764 Gene3D - 80 168 - -
Dere07g0518 764 SMART START_1 285 505 IPR002913 GO:0008289
Dere07g0518 764 Pfam START domain 286 505 IPR002913 GO:0008289
Dere07g0518 764 MobiDBLite consensus disorder prediction 55 102 - -
Dere07g0518 764 CDD START_ArGLABRA2_like 280 504 - -
Dere07g0518 764 MobiDBLite consensus disorder prediction 57 73 - -
Dere07g0518 764 FunFam Homeobox-leucine zipper protein GLABRA 2 285 504 - -
Dere07g0518 764 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Dere07g0518 764 FunFam Homeobox-leucine zipper protein HDG1 81 167 - -
Dere07g0518 764 SUPERFAMILY Homeodomain-like 84 151 IPR009057 -
Dere07g0518 764 SUPERFAMILY Bet v1-like 277 507 - -
Dere07g0518 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 90 759 IPR042160 -
Dere07g0518 764 SUPERFAMILY Bet v1-like 525 756 - -
Dere07g0518 764 CDD homeodomain 94 152 IPR001356 GO:0003677
Dere07g0518 764 ProSiteProfiles START domain profile. 276 508 IPR002913 GO:0008289
Dere07g0518 764 Coils Coil 157 177 - -
Dere07g0518 764 Gene3D - 341 502 IPR023393 -
Dere07g0518 764 SMART HOX_1 92 155 IPR001356 GO:0003677
Dere07g0518 764 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Dere07g0518 764 Pfam Homeodomain 94 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0518 Dere-ChrDere07 8224876 8229365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0518 63 764 Homeobox Transcription Factor Family AT1G05230 81.330 0.0 1166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere07g0518 START 1.4e-58 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0825 08 12033667 12037106 Dere07g0518 07 8224876 8229365 CCT
Dere07g0518 07 8224876 8229365 Dere07g0518 07 8224876 8229365 ECH