Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0486 ATGAAGACCGAGTTAAAAGGAAGCACTACTTCCATTTCCCTCCAATACCCATCACTCTTCAACGCACCCCACAATAGTCCTGATCTTTCAGGGGCACTCAAAGGGTGTCTCGGAAGCATCGATGGAGCTTGTATAGAGAAGCTCCTACTCCATTGTGCTAGCGCTTTAGAGAACAACGATGTGACTTTAGCTCAACAAGTGATGTGGGTGCTCAATAACGTTGCTTCTTCAGTTGGCGACACCAACCAGAGGCTCACCTCGTGGTTCCTCAGGGCCTTAATCTCTAGGGCTTCAAGAGTCTGCCCTATGAACTTCAACGGAAGAAGCAGTACTATCCAGAGGAGGTTGATGTCCGTGACAGAGCTAGCAGGGTACGTTGATCTTATCCCTTGGCATAGGTTTGGGTTTTGTGCTTCCAATAGTGCTATTTTCAAAGCAATTGATGGGTTCCAAAAGGTTCACATACTAGATTTTAGTATTACCCATTGTATGCAGTGGCCTACACTCATAGATACCTTAGCCAAACGGCCAGAAGGCCCTCCTGAGGTTAAAATCACCGTGCCTTCTTGTAGGCCACCTGTCCCTCCTTTGGTCAATATTTCAACAGAAGAAGTTGGGCTGCGTTTGGGGAACTTTGCTAAGTTCAGGGATGTACCTTTCGAATTCAATGTGATTGGAAGTAGCGCATCTTCTACATTAAGTAATAAGGAGTCATCCAGCTTTCACTTTGAGTCACTGTTAAGTCACTTGAATCCCACTACGTTAAATCTCAGTGAAGACGAGGCCTTGGTGATAAATTGCCAAAATTGGCTACGTTACTTGTCTGATGAAAGAATGGGCAGTTTCCAAAATGCTTCCCCTAGGGATACTTTTATAAATGTAATTAAAAGTCTTAACCCCAGAATAGTACTATTGGTTGACGAGGATTGTGATCTCAGTGCACCAAGTCTCACGTCAAGAATCACCATTTGTTTCAACTACTTGTGGATACCCTTTGACGCTTTGGAAACTTTTTTGCCCAAAGATAGTAGCCAGAGGGTTGAGTATGAATCTGACATAGGCCAGAAAATTGAGAACATCATTAGCTTTGAGGGGGTTCAGAGAATAGAGAGATTGGAGAGCGGTGCCGAAGTGTCACAAAGGATGAAAAATGGGGGTTTCTTCAGCATTCCATTTTGTGAAGAAACTGTGAGGGAAGTTAAGGCTTTGCTTGATGAGCATGCTTGTGGATGGGGGATGAAGAAAGAAGAAGATACGTTAGTTCTCACATGGAAAGGCCATAACTCTGTATTTGCCACAGCTTGGGTCCCCATTGAATTAAGCGATCATGTGGGCGTGGACTGA 1344 0.4435 MKTELKGSTTSISLQYPSLFNAPHNSPDLSGALKGCLGSIDGACIEKLLLHCASALENNDVTLAQQVMWVLNNVASSVGDTNQRLTSWFLRALISRASRVCPMNFNGRSSTIQRRLMSVTELAGYVDLIPWHRFGFCASNSAIFKAIDGFQKVHILDFSITHCMQWPTLIDTLAKRPEGPPEVKITVPSCRPPVPPLVNISTEEVGLRLGNFAKFRDVPFEFNVIGSSASSTLSNKESSSFHFESLLSHLNPTTLNLSEDEALVINCQNWLRYLSDERMGSFQNASPRDTFINVIKSLNPRIVLLVDEDCDLSAPSLTSRITICFNYLWIPFDALETFLPKDSSQRVEYESDIGQKIENIISFEGVQRIERLESGAEVSQRMKNGGFFSIPFCEETVREVKALLDEHACGWGMKKEEDTLVLTWKGHNSVFATAWVPIELSDHVGVD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0486 447 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 45 424 IPR005202 -
Dere07g0486 447 Pfam GRAS domain family 46 435 IPR005202 -
Dere07g0486 447 ProSiteProfiles GRAS family profile. 36 436 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0486 Dere-ChrDere07 7932014 7933357 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0486 33 438 GRAS Transcription Factor Family AT3G49950 47.356 2.80e-126 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere07g0486 GRAS 3e-87 CL0063