Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0467 ATGAAAAATTGTGAGCTTTGCAAGATTCCGGCAAGGGCCTACTGCGAATCGGATCAAGCTAGCTTATGCTGGGACTGTGACGCGAAGGTTCACGGAGCTAATTTTTTGGTAGCCAGGCACTCGAGGACTCTTCTATGCCATGTGTGTCAGTCTCTGACGCCGTGGAAAGCCTCTGGTGCGGTGCTTGGAAACACTATTTCAGTTTGCCGGAATTGTGAAGGTAGAATGAGCTTTAGCGGTGAAGATAGCGAGGACAGCGAAGAAGGTCCTGACAGCGAAGTAGACCCGGAAATCGACGACGATGGCGATGCCATGATTGGCGAAGACGATATCGACGGCGATGAGGTAGGCGGTGATGAGGAGGGAGATAATCAAGTAGTCCCATGGTCCTCCTCGACGCCACCACCGGCCGCAAGCTCTTCGAGTAGCGATGAGTCTGTTTCGAGGCCTAATAAAGGCAATAAAGATGCCTCTGAATCAGTAACTTCCTCGAAACGAAGGCGCGGGGATGCATCCGATCATAATTTCCAGGTTCTTCTCATGATTTTTTTTCCACAATTTTTGTTCTATAATTTGTCTCCTCATTCTATGATTATTTTTAGATTCTCCTTACATTTTGAGTTTTGA 627 0.4769 MKNCELCKIPARAYCESDQASLCWDCDAKVHGANFLVARHSRTLLCHVCQSLTPWKASGAVLGNTISVCRNCEGRMSFSGEDSEDSEEGPDSEVDPEIDDDGDAMIGEDDIDGDEVGGDEEGDNQVVPWSSSTPPPAASSSSSDESVSRPNKGNKDASESVTSSKRRRGDASDHNFQVLLMIFFPQFLFYNLSPHSMIIFRFSLHFEF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0467 208 MobiDBLite consensus disorder prediction 125 158 - -
Dere07g0467 208 CDD Bbox1_BBX-like 4 45 - -
Dere07g0467 208 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Dere07g0467 208 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 170 - -
Dere07g0467 208 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Dere07g0467 208 SMART bboxneu5 1 45 IPR000315 GO:0008270
Dere07g0467 208 MobiDBLite consensus disorder prediction 77 169 - -
Dere07g0467 208 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0467 Dere-ChrDere07 7627054 7627680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0467 2 88 C2C2-CO-like Transcription Factor Family AT5G54470 61.957 2.83e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dere07g0467 zf-B_box 2e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere08g0782 08 11583221 11584085 Dere07g0467 07 7627054 7627680 CCT
Dere07g0467 07 7627054 7627680 Dere07g0467 07 7627054 7627680 ECH