Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0454 ATGAGGAGGCCGTCCACTGACAAAAGTGGACTGAGGAAAGGCACTTGGACACCTGAGGAAGACAGCAAGCTCATTGCTTATGTTACCAAGTATGGCTGCTGGAATTGGCGCCAACTCCCCAGGTTTGCAGGTCTGGCAAGGTGTGGAAAAAGTTGTAGACTGAGGTGGCTCAATTATCTGAGGCCAGACATCAAAAGAGGGAACTACACCCAGGAAGAAGACGATATTATTATCAAACTCCACCAACAGCTAGGTAACAGATGGGCTGCTATAGCGGCTAAGTTACCGGGAAGAACAGACAGTGATATAAAGAACCACTGGCACACCAACCTCAAGAATCAGCAGCAAATTCAACATCAAAACAACTCAGTAAAACGTGAGAAGGATGAAAGAATAGTCAGACAAAGCAACCATGATTCTCAAGGTGTCACTATCACTAGTACGGCATCTTTCGAGGTCCTCGATAATGGAAAACCGTTGACGGAGTCAACATGGAGTGAGTCATCTGACATTACCGCAGAGAGCAACGAGGATTTGGTTGTAGAGCATGACTTTGCTTTTCTGTATGCTTATACTGAGCCACCGAGTGGAGACTTCTGGACAGAGCCCTATGTGGTTGATTCTGACATATCCTACGTCCCTGATGAATTTGGGACTGAAATGTGCAATACTGCGCAACTTTGGACACACAATAACTTATATGAGCAATATTCTGGCTTCTACGAATTATAA 732 0.4508 MRRPSTDKSGLRKGTWTPEEDSKLIAYVTKYGCWNWRQLPRFAGLARCGKSCRLRWLNYLRPDIKRGNYTQEEDDIIIKLHQQLGNRWAAIAAKLPGRTDSDIKNHWHTNLKNQQQIQHQNNSVKREKDERIVRQSNHDSQGVTITSTASFEVLDNGKPLTESTWSESSDITAESNEDLVVEHDFAFLYAYTEPPSGDFWTEPYVVDSDISYVPDEFGTEMCNTAQLWTHNNLYEQYSGFYEL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0454 243 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Dere07g0454 243 SMART sant 12 62 IPR001005 -
Dere07g0454 243 SMART sant 65 113 IPR001005 -
Dere07g0454 243 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 170 - -
Dere07g0454 243 CDD SANT 68 111 IPR001005 -
Dere07g0454 243 CDD SANT 15 60 IPR001005 -
Dere07g0454 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dere07g0454 243 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dere07g0454 243 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dere07g0454 243 FunFam MYB-related transcription factor 12 65 - -
Dere07g0454 243 Gene3D - 68 140 - -
Dere07g0454 243 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dere07g0454 243 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Dere07g0454 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dere07g0454 243 Gene3D - 13 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0454 Dere-ChrDere07 7359529 7360602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0454 2 208 MYB Transcription Factor Family AT2G31180 44.928 2.51e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere07g0454 Myb_DNA-binding 4.6e-13 CL0123