Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0377 ATGAAGCTAAGACGCAGCATGTGGTCTGGACAACCCGTAAAGTCAATTGACAGCTTCTATTGTGAAGCCGCCATCAAACTGTCGGCAACACCCCCAACTGTTCTTCTCATTCTTCTTCTTCTCGAGTTCTGCGCTCGCCGGAGCTCTGAAACTGTGGTGGACCGCTGCCCCATTTTGCCCCACTACACAATGCCGCGCCAACGTAGCTCCGCCGTGATTCTTTTGTCAATGCTGATTAACATGTTGCTGGTAGCCGCGCAGGGGCAGCTTCAGCACAGGGTTTTAGACCCGCATTGGTACCCGGGCACGGCCACCTGGTACGGGGACCCAGAAGGAGACGGAAGTAGCGGTGGGGCGTGCGGGTACGGGTCGTTGGTGGACGTGAAGCCATTGAAGGCGCGAGTGGGGGCGGTGGGGCCGGTTCTGTTCATGAAGGGGGAGGGGTGTGGTGCATGCTATAAGGTGAAGTGTCTGGACAAGAGCATATGCTCGAAACGAGCCGTCACGGTTATAATCACCGACGAGTGCCCAGGCTGCCCCTCCGAGCGCACCCACTTCGACCTCAGTGGCGCCGCCTTTGGCCGCATGGCTGTCGCCGGTGAGAACTCTCAGCTCAGAGACCGCGGTCAAATTTCAGTCGTTTACCGAAGAACACAGTGTAAATATCCTGGCAAAAACATTGCTTTCCATGTTAATGAAGGTTCGACACCTTTTTGGCTGTCACTTTTGGTAGAGTTTGAGGACGGAGATGGAGACATTAGCTCTATGCATATACAAGAAGCTGGGTCAAGTGAGTGGCTTCAGATGAATCATCTGTGGGGTGCAAACTGGAACATTGTTGCAGGACCTTTGAGGGGACCATTCTCTGTGAAACTAAGCACATCCACTGGGAAAACACTTTCTGCCAGAGATGTTATCCCAAGCAACTGGACTCCAAAAGCCACTTACACATCTCGGCTCAATTTCTTCCCTTAG 975 0.5344 MKLRRSMWSGQPVKSIDSFYCEAAIKLSATPPTVLLILLLLEFCARRSSETVVDRCPILPHYTMPRQRSSAVILLSMLINMLLVAAQGQLQHRVLDPHWYPGTATWYGDPEGDGSSGGACGYGSLVDVKPLKARVGAVGPVLFMKGEGCGACYKVKCLDKSICSKRAVTVIITDECPGCPSERTHFDLSGAAFGRMAVAGENSQLRDRGQISVVYRRTQCKYPGKNIAFHVNEGSTPFWLSLLVEFEDGDGDISSMHIQEAGSSEWLQMNHLWGANWNIVAGPLRGPFSVKLSTSTGKTLSARDVIPSNWTPKATYTSRLNFFP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0377 324 FunFam Expansin B3 85 221 - -
Dere07g0377 324 Pfam Expansin C-terminal domain 227 307 IPR007117 -
Dere07g0377 324 SUPERFAMILY PHL pollen allergen 225 318 IPR036749 -
Dere07g0377 324 Gene3D - 221 319 IPR036749 -
Dere07g0377 324 FunFam Beta-expansin 3 222 323 - -
Dere07g0377 324 SMART dpbb_1 135 215 IPR007112 -
Dere07g0377 324 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 238 318 IPR007117 -
Dere07g0377 324 PANTHER EXPANSIN-B3 79 322 - -
Dere07g0377 324 SUPERFAMILY Barwin-like endoglucanases 93 224 IPR036908 -
Dere07g0377 324 CDD DPBB_EXPB_N 99 220 - -
Dere07g0377 324 PRINTS Expansin/Lol pI family signature 139 157 IPR007118 GO:0005576
Dere07g0377 324 PRINTS Expansin/Lol pI family signature 98 113 IPR007118 GO:0005576
Dere07g0377 324 PRINTS Expansin/Lol pI family signature 208 224 IPR007118 GO:0005576
Dere07g0377 324 PRINTS Expansin/Lol pI family signature 116 134 IPR007118 GO:0005576
Dere07g0377 324 PRINTS Expansin/Lol pI family signature 304 318 IPR007118 GO:0005576
Dere07g0377 324 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Dere07g0377 324 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Dere07g0377 324 PRINTS Major pollen allergen Lol pI signature 197 212 IPR005795 GO:0005576|GO:0019953
Dere07g0377 324 PRINTS Major pollen allergen Lol pI signature 245 260 IPR005795 GO:0005576|GO:0019953
Dere07g0377 324 PRINTS Major pollen allergen Lol pI signature 229 244 IPR005795 GO:0005576|GO:0019953
Dere07g0377 324 PRINTS Major pollen allergen Lol pI signature 294 311 IPR005795 GO:0005576|GO:0019953
Dere07g0377 324 Gene3D - 84 220 IPR036908 -
Dere07g0377 324 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 117 225 IPR007112 -
Dere07g0377 324 Pfam Lytic transglycolase 140 214 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0377 Dere-ChrDere07 6686610 6692775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0377 64 260 Expansin Gene Family AT4G28250 66.497 2.88e-92 272