Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere07g0367 | ATGGCTGCCTTGGATCAGTATGTTGCAGAGGCTGTGCCCCAAGCTGATTCCTTTAGAGAAGATAAATCTTGTTTGGAAAAATGGGCATCTGCAAGTGATTCCATCGAAGATTCTGATAGAAATGGCTCTAACAGCTTTGACTGCAATATCTGCTTGGACAACGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTCATTTCTGCAGTATCTCCTCTGAAGAAAATGAACAGCAGACACCACAGTGTCCGGTGTGCAAAACAGAAGTTTCCCAATCCTCCCTCATTCCACTCTATGGCCGAGGCCAAACCACAAGAACTTCCAAAGGCAAGTCCCGTCATGTGGGGACAATCATACCACAAAGACCACATGGACCTTTGTGGGTCGTTCACCCGCAAAGATCATCCAATGCTACTACTACGGTTCCCCAACCCACTTCGCGATCTTATCATCGCCATTATCCCTATCATGCTCAACAGTTCAACTCAATTCCTGGCGGTTACACCTCACCAATGCTTGGCATGGATGGTGCAATAAGAAACGCATTTGATACGAGAACAGTTTTTGGCGAGATGGTATATGCAAGGGTGTTTGGTAACCAAGTGACAAATGTATATACTTACCCTAATACATATAATCTAGCAGGGAACAGTAATCCGAGGATCAGAAGGCATTTGATGCAAGCTGATAAGCAACTGAACAGAATCTGCTTTTTCCTACTTTGTTCTTTAGTTTTGTGTCTTCTCTTATTCTGA | 786 | 0.444 | MAALDQYVAEAVPQADSFREDKSCLEKWASASDSIEDSDRNGSNSFDCNICLDNVQDPVVTLCGHLYCWPCIYKWLHFCSISSEENEQQTPQCPVCKTEVSQSSLIPLYGRGQTTRTSKGKSRHVGTIIPQRPHGPLWVVHPQRSSNATTTVPQPTSRSYHRHYPYHAQQFNSIPGGYTSPMLGMDGAIRNAFDTRTVFGEMVYARVFGNQVTNVYTYPNTYNLAGNSNPRIRRHLMQADKQLNRICFFLLCSLVLCLLLF | 261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere07g0367 | 261 | ProSiteProfiles | Zinc finger RING-type profile. | 48 | 97 | IPR001841 | - | |
| Dere07g0367 | 261 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 7 | 258 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
| Dere07g0367 | 261 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 115 | IPR013083 | - | |
| Dere07g0367 | 261 | ProSitePatterns | Zinc finger RING-type signature. | 63 | 72 | IPR017907 | - | |
| Dere07g0367 | 261 | FunFam | E3 ubiquitin-protein ligase RMA1H1 isoform A | 31 | 110 | - | - | |
| Dere07g0367 | 261 | Pfam | RING-type zinc-finger | 48 | 94 | IPR027370 | - | |
| Dere07g0367 | 261 | SMART | ring_2 | 48 | 96 | IPR001841 | - | |
| Dere07g0367 | 261 | SUPERFAMILY | RING/U-box | 44 | 109 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere07g0367 | Dere-ChrDere07 | 6650544 | 6651329 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere07g0367 | 41 | 261 | C3H Transcription Factor Family | AT4G28270 | 36.726 | 6.58e-44 | 145 |