Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0348 ATGGATCATCAGCAAGGAAGTCAGTCCTCTTCTTCTACCAAAGTCGAAAGAAGAATCGTAGAGAAAAACAGAAGAAACCAGATGAAGACCCTCTACTCTAAGCTCCACTCTCTCCTCCCTAACTACAATCCCAAGGAGTTGCTACCACTGCCTGATCAGATAGACCAGGCTATAAACTACATAAAGAGCTTGGAGGCGAAGGTGAAGATGGCCCAAGAGAAGAAAGAAAGCTTGAGGGGACACAGGAAGAGATCACTTGCAAGCTGCTCAAGTAGTGCTTTTGAGACGAAGACAATTAGCCTAAGGTCACCCCAAATTGAGATTCGTGAAATGGATTCCTCGCTAGAAGTTGTTCTGATCACTGGGTTAGACAACCAGTTCATTTTCTACGAAATCATTCGCATACTCCATGAAGAGAATATAGATGTCGTGGCTGCCAATTCCTCTCTTGCTGGCGACGCAATGCATCACGTTGTGCATGCAGAGATTGGAAAATCGTCGCTTCAATTTGGAGCAACGAAGGTAAGTGAGAGACTCAAAAGTTTTGTGTATGGATCCACAAGTGACGTAAAAATACAGCCAGCTTTGTGGGATTTTGATATTGCTTCTGAACCGTGGGGCTTCTAA 627 0.4434 MDHQQGSQSSSSTKVERRIVEKNRRNQMKTLYSKLHSLLPNYNPKELLPLPDQIDQAINYIKSLEAKVKMAQEKKESLRGHRKRSLASCSSSAFETKTISLRSPQIEIREMDSSLEVVLITGLDNQFIFYEIIRILHEENIDVVAANSSLAGDAMHHVVHAEIGKSSLQFGATKVSERLKSFVYGSTSDVKIQPALWDFDIASEPWGF 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0348 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 82 IPR036638 GO:0046983
Dere07g0348 208 Coils Coil 54 81 - -
Dere07g0348 208 Gene3D - 4 93 IPR036638 GO:0046983
Dere07g0348 208 FunFam Transcription factor bHLH162 5 91 - -
Dere07g0348 208 Pfam Helix-loop-helix DNA-binding domain 15 65 IPR011598 GO:0046983
Dere07g0348 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 12 64 IPR011598 GO:0046983
Dere07g0348 208 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0348 Dere-ChrDere07 6464985 6465873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0348 7 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.344 3.86e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere07g0348 HLH 1.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0348 07 6464985 6465873 Dere07g0348 07 6464985 6465873 ECH