Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0339 ATGGATGCTGCAAAAGTAGATGGGTTTAACCCAAAAATGGCTAATGAGAAGGCGATGAAGAGGGAGGCAACAAAGGAACTTGTGGAGAAGTATGGGAAGAAAGGATCCATTTGTATGCGGTGCTGCCAAGCCGAGAAGTGCACCGCTGATCTCAGTGATGCTAAGCATTACCATAGGAGGCACAAGGTGTATGAATATCATGCCAAGGCTCAAATTGTGCTTGTGGGCAGCAAACGACAACGTTTTTGTCAGCAATGCAGCAGGTCTGGGGTGGTTCGACTTTTGGGTTTTCCCTATCATTTCTGGGATTGCTTATGTTGTTAA 324 0.4599 MDAAKVDGFNPKMANEKAMKREATKELVEKYGKKGSICMRCCQAEKCTADLSDAKHYHRRHKVYEYHAKAQIVLVGSKRQRFCQQCSRSGVVRLLGFPYHFWDCLCC 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0339 107 ProSiteProfiles Zinc finger SBP-type profile. 39 107 IPR004333 GO:0003677
Dere07g0339 107 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 88 IPR044817 GO:0003677
Dere07g0339 107 SUPERFAMILY SBT domain 40 91 IPR036893 GO:0003677|GO:0005634
Dere07g0339 107 Pfam SBP domain 42 88 IPR004333 GO:0003677
Dere07g0339 107 Gene3D - 37 97 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0339 Dere-ChrDere07 6369259 6369582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0339 32 88 SBP-box Gene Family AT1G02065 61.404 2.84e-18 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Dere07g0339 SBP 9.8e-15 No_clan