Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0337 ATGCCTGCGCAGAAGCGGTCCTTGCCAGATTCTCCTGACGATGGAGAGGCTTCAGAACTCTACAACCCCCGCTATGCGAAGCAATCTCATCGCGACCGAGAGCTAAAAGGCGAGGAACAACGGGAAGAGGAAGATGAGCAAGGGGAGCTAGGTGAAGGGGAAGAAGCAGGACAGCAGAACGAGCAAGAACAGGATAAGGAGGAGAAAGCAGAGGATTCTGAGGAAAGCCCTTCTTCTGAACCCGAAGAGAAACCTGAATTTGTGTTCGTAGAACTTCCAGAAATTCGTAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATCAAGAAAACACGGACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGATAAATCGATGCGACTAGGGAATAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGTTCCTTGAGAGATGATCCAAACTATGATTCTCTAATTGCTGCTTTGTATCCAGATATTGAGAAGTATGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGACCCGCAATAAGCAGATTCAGGCTTCAATCGCAAAAGTAGTTCAACGACAATCTGAAGCACTGGTTAAGAGACGTAGTAAGGATACACCATCAGGTGCATTTGTGACAAGATCACAGCGCATGCATCGGAATGTTAATCCTAGGAGACAAAACCATGGAATTGATCTTCCAGGATCAGAAGACAATGAGGAGGAAAATGAAAATAATGGAGAAAAAGACTCATCTTCCACTGATGAGCGGGGCACAGAGATCAGGCAGAGAAGGCGAAAGAGACGAACGAGAGTTCGTCCCTCTCAGCCTTCCTCATCAATGGCAAGCCCTGATGGTGGATTTATAGAAAGTGATGTGGATATAATGAGAGAAAATCGAGGAATTTCTTCTAGGCATCTGTCAAAAACTCGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACCCGACATGGCAGTGGCAGTGGTAGCAATAGCAAGAATTCACGCAGTAGTCGCCTGTCTAAGTTCGTTGATTATTTAAGAAGCTTAGATGAAAACACTGATGAGTTAGATGTCCATCTCATTCTTGTTTCTTTGGACAAAGAAAGTATACCAAGTTTGCAGCAGCCACACCTTTGCTGTCGGCCAACTTTGTCCGTCAAACACCTTTGTGAGTATGTTGCTCGTCAGACTCCTTTGCCAGCTGAAGAAGTTGAGATATTGGCGGTTAAAGGATGCTGCAACATCACCTGTAAGAAGTCAGCTGATGAGGCTTCAACCTTACTGTATGATGAGCTTACAGAAGTGATGGTAGATCCATGCCAAGATAAACTGGAAATTTTGCAAGTACATGAAACTCTGGCGGGGCTCAAGTCCAAGTGCATGTCTAAAAGGGAGCATTTGATTCTGGCATTCAGGAAGAAGGAGACAATGTAG 1458 0.452 MPAQKRSLPDSPDDGEASELYNPRYAKQSHRDRELKGEEQREEEDEQGELGEGEEAGQQNEQEQDKEEKAEDSEESPSSEPEEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDSLIAALYPDIEKYEEEELEFREEEKTRNKQIQASIAKVVQRQSEALVKRRSKDTPSGAFVTRSQRMHRNVNPRRQNHGIDLPGSEDNEEENENNGEKDSSSTDERGTEIRQRRRKRRTRVRPSQPSSSMASPDGGFIESDVDIMRENRGISSRHLSKTRKLTWGRGGFRSHTRHGSGSGSNSKNSRSSRLSKFVDYLRSLDENTDELDVHLILVSLDKESIPSLQQPHLCCRPTLSVKHLCEYVARQTPLPAEEVEILAVKGCCNITCKKSADEASTLLYDELTEVMVDPCQDKLEILQVHETLAGLKSKCMSKREHLILAFRKKETM 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0337 485 CDD RING-HC_RING1-like 98 163 - -
Dere07g0337 485 MobiDBLite consensus disorder prediction 1 86 - -
Dere07g0337 485 ProSiteProfiles Zinc finger RING-type profile. 101 141 IPR001841 -
Dere07g0337 485 ProSitePatterns Zinc finger RING-type signature. 117 126 IPR017907 -
Dere07g0337 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 171 IPR013083 -
Dere07g0337 485 SUPERFAMILY RING/U-box 93 155 - -
Dere07g0337 485 PANTHER OS11G0578200 PROTEIN 1 483 IPR044592 -
Dere07g0337 485 SMART ring_2 101 140 IPR001841 -
Dere07g0337 485 MobiDBLite consensus disorder prediction 25 40 - -
Dere07g0337 485 MobiDBLite consensus disorder prediction 296 310 - -
Dere07g0337 485 MobiDBLite consensus disorder prediction 251 267 - -
Dere07g0337 485 Pfam Zinc finger, C3HC4 type (RING finger) 100 140 - -
Dere07g0337 485 MobiDBLite consensus disorder prediction 199 343 - -
Dere07g0337 485 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0337 Dere-ChrDere07 6340788 6347338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0337 94 164 C3H Transcription Factor Family AT3G23060 35.135 2.82e-07 50.8