Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0334 ATGAGCAGTTCTATATGTGCAGAGAACGAGTTCCATAATACCCACCATCTACTATTTCCGAAAAAATCAATGATCAGAAACATTGACAACATCCCCCCCAGGAAGCTCCTCACTCGCCGTGGTGGCGCCAGTGCCGACATCCACAACGTAGCCGATATGTACTCTAACTCGCCGCCGTTCTCTTCTGCCGAAGAGACCCTTCTGCGAAAATTTCTTCCCTACAACAACCTCAAGGACAACTCGGACGACGACGATGATTCCGACCCGTACTCCTCCGATCACTTCCGTATGTTCGAGTTTAAGGTCCGCCGGTGCACTCGCAGCCGGAGCCACGACTGGACGGACTGCCCCTTCGCTCATCCCGGCGAGAAGGCTCGACGGCGCGACCCCAGAAGGTACCACTACTCTGGGACCATCTGCTCCGAGTATCGCCGCGGCGGAGGATGCAGTCGCGGCGATAGTTGTGAGTTTGCACACGGGGTGTTTGAGTGTTGGCTTCACCCAGCAAGGTACAGAACAGAGGCTTGTAAGGATGGGAAGAATTGTAAGCGAAAGGTATGCTTCTTCGCTCATACTCCTCGCCAACTCAGAATTCTGCCTGTGAATTGCCCCGATCCTTCTTCACCTGATAAAATCTCAAGCAAGAAGAAAAAATTCTTAAGCCCCTCATTGGGATCAAAAAATTGCTATTTGTATTGTCATTGCTCGGCTGCTGCTCTTGCTTCTCCAAGTTCCACCCTGTTTGGGATGTCCCATTTGTCACCACCGTTGTCGCCGTCGTCCTCTGTCTCGCCGCCTCTTTCGCCAATCGAACACCGGTCCTCAGCAAATGGGGTGTCGCCAATTTCTCGATATACTGATAGATATGGGGGTTCTGAGACTTGTAATCAAGGGATGGTGGTGAGCTATAAAGACGTACTCACTGAGTTGATGAGCTCCTTGGAGGGTCTGAATTTCAGTGAAGCTTCATCGCCTGTATTTTCTGTAACCCCCACTAATAAACCTCCGAATCTGCCATGGCTTGATGTTTCTTGCTTTAACTGTGATGATCAGTTCATTCCTTCACCGTCCCCTTCTTTCAACTGTGAAGATCAGCAGCAGTTTATTCTTTCACCATCTTCTCTCATTTCTCAGACCCCAACAACAACAACTACATCTGCCTCTGCAGGAAGCCTTTCCAATAGGAAATTTTCAAGCGAGAAAATATTCAGCAACGAGGGCAGAACAGTTGATGATAATAATGGCTCTTCTTTTGCAACCCCAGATCTCGGATGGGTCAATGACTTGCTGATGTAG 1296 0.4938 MSSSICAENEFHNTHHLLFPKKSMIRNIDNIPPRKLLTRRGGASADIHNVADMYSNSPPFSSAEETLLRKFLPYNNLKDNSDDDDDSDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTICSEYRRGGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNCPDPSSPDKISSKKKKFLSPSLGSKNCYLYCHCSAAALASPSSTLFGMSHLSPPLSPSSSVSPPLSPIEHRSSANGVSPISRYTDRYGGSETCNQGMVVSYKDVLTELMSSLEGLNFSEASSPVFSVTPTNKPPNLPWLDVSCFNCDDQFIPSPSPSFNCEDQQQFILSPSSLISQTPTTTTTSASAGSLSNRKFSSEKIFSNEGRTVDDNNGSSFATPDLGWVNDLLM 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0334 431 SMART c3hfinal6 134 161 IPR000571 GO:0046872
Dere07g0334 431 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Dere07g0334 431 SUPERFAMILY CCCH zinc finger 133 164 IPR036855 GO:0046872
Dere07g0334 431 Gene3D - 130 202 - -
Dere07g0334 431 ProSiteProfiles Zinc finger C3H1-type profile. 135 162 IPR000571 GO:0046872
Dere07g0334 431 PANTHER UNKEMPT FAMILY MEMBER 62 430 IPR045234 -
Dere07g0334 431 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 160 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0334 Dere-ChrDere07 6325068 6326363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0334 86 197 C2H2 Transcription Factor Family AT5G07500 66.964 1.46e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere07g0334 zf-CCCH 9.4e-08 CL0537