LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g0331	ATGATGATGAGAGGGCGGGACAGCGTGACTGGTTTTAGAGGACGCGTCGAGAGCAAGACAAGGACACGTGTACGCGTTCCAGTGGCCAGTGCTTGTTCGTTATCACTGTGGATCATGCGAAACCCTGCAATGGCTGTGAAGGAAAGGCTCGGTGTCAAGATCAATAAGCCGAACAATGCCAAAGAGGTTCACTATAGGGGTGTCCGCAAGAGGCCTTGGGGCCGTTACGCCGCCGAAATTCGAGATCCTGGCAAGAAGAGCCGCGTATGGCTGGGCACGTTCGACACGGCGGAGGAAGCCGCCAGAGCCTACGACGCTGCCGCCAGGCAATTCCGGGGCCCCAAGGCTAAGACCAACTTTCCGTTGCCCAACGAAGGCGGTCTCAACGGAAATACTAACCAGAGCCCCAGCGAGACTAGCACCGTCGAGTCGTCCAGCCCGGACGGCTCGGAGCGTGAGATCACGCGCCGCTGTGACGTCGGTGTAGTCGTGGATCGGTTCCCGTTTCTTCCGATTCAGCCTCACCACATGGCGTTTGGTGGGGGTGCAGGTGTAGCAGGTGTGCTGCCCTCTGCGCGCCCGGTTTTCTTTTTTGAGCCTGCTGGAGTTAGGACCGAGTTTGTCGGTCAGCGTTATCCGGTCCGGTTGGAGCCGGTTCCGGTCCAGGTTAAGACCAAATTGGTGAGTGGGCGACAGAGTGACTCGGATTCGTCGTCCGTCGTGGATTGTCAACCTAGGAAAGCTGTGAATCTCGATCTTAACCTCGCTCCTCCGATGGACGATTGA	786	0.5789	MMMRGRDSVTGFRGRVESKTRTRVRVPVASACSLSLWIMRNPAMAVKERLGVKINKPNNAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPLPNEGGLNGNTNQSPSETSTVESSSPDGSEREITRRCDVGVVVDRFPFLPIQPHHMAFGGGAGVAGVLPSARPVFFFEPAGVRTEFVGQRYPVRLEPVPVQVKTKLVSGRQSDSDSSSVVDCQPRKAVNLDLNLAPPMDD	261

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g0331	261	ProSiteProfiles	AP2/ERF domain profile.	64	121	IPR001471	GO:0003700\|GO:0006355
	Dere07g0331	261	FunFam	Ethylene-responsive transcription factor 2	63	122	-	-
	Dere07g0331	261	Pfam	AP2 domain	64	113	IPR001471	GO:0003700\|GO:0006355
	Dere07g0331	261	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	52	241	-	-
	Dere07g0331	261	SMART	rav1_2	64	127	IPR001471	GO:0003700\|GO:0006355
	Dere07g0331	261	SUPERFAMILY	DNA-binding domain	64	122	IPR016177	GO:0003677
	Dere07g0331	261	CDD	AP2	64	121	IPR001471	GO:0003700\|GO:0006355
	Dere07g0331	261	Gene3D	AP2/ERF domain	63	122	IPR036955	GO:0003700\|GO:0006355
	Dere07g0331	261	PRINTS	Ethylene responsive element binding protein signature	87	103	IPR001471	GO:0003700\|GO:0006355
	Dere07g0331	261	PRINTS	Ethylene responsive element binding protein signature	65	76	IPR001471	GO:0003700\|GO:0006355
	Dere07g0331	261	MobiDBLite	consensus disorder prediction	124	148	-	-
	Dere07g0331	261	MobiDBLite	consensus disorder prediction	114	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g0331	Dere-ChrDere07	6285526	6287384	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g0331	61	261	AP2-EREBP Transcription Factor Family	AT5G44210	49.029	1.91e-51	165

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere07g0331		AP2	1.2e-15	CL0081