Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0323 ATGGCTTCGTTGTTTAAGGATCTAACAAGGCTTTCAGCCTATCGAGATAGAAGATTTCCTGGAACACAAGAGGACTTTGAACAAGCGCTCCAGGCATCAACCACTGTTTATGTGGGAAATATGTCCTTTTACACAACAGAAGAGCAAGTATATGAACTTTTTACCCGAGCTGGAGAAATTAAGAAAATCATAATGGGATTGGATAAAAACACAAAAACTCCCTGTGGCTTTTGTTTTGTTTTATACTACTCTCGCGAGGATACTGAGGATGCTGTCAAATACATAAGTGGGACAATACTAGATGATCGTCCAATTCGTGTAGATTTTGACTGGGGATTCCAGGAAGGAAGACAATGGGGTCGTGGTCGTAGTGGTGGCCAAGTGCGTGACGAATATCGGACTGATTATGATCCTGATATCCTTTTTGACGTTAAAACTGCACTGAATTGCAATTTTCTTCCTCTATTGAACAATGAAAGTAATTTAGTTCAGAAAGAGTTGGAAGCACAAAGGCAGCTTGTTGATTATGGTGCTGGTTCTTTGGGTGCTTTTCCACCGGTTATGCCACCATCCTATGGTAGACATGGTCATGGTGGTTCTCATCGGCATGGTAGAGATTATTATAGGAAGAGACACAGAGATGATGATCACCATGCTTACGAGTCCTCAAAAAGAACATCAGATTATGAATCTCGGAGGATCTCTGATCATGACTCTAGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGTGATTCTGATGATGATGAGGAAGATGATCGAAAAAAACAATCTTAG 798 0.4098 MASLFKDLTRLSAYRDRRFPGTQEDFEQALQASTTVYVGNMSFYTTEEQVYELFTRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPDILFDVKTALNCNFLPLLNNESNLVQKELEAQRQLVDYGAGSLGAFPPVMPPSYGRHGHGGSHRHGRDYYRKRHRDDDHHAYESSKRTSDYESRRISDHDSRPEKNPRFRESGDSDDDEEDDRKKQS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0323 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Dere07g0323 265 CDD RRM_NCBP2 36 113 IPR034148 -
Dere07g0323 265 Gene3D - 6 140 IPR012677 -
Dere07g0323 265 MobiDBLite consensus disorder prediction 211 265 - -
Dere07g0323 265 SUPERFAMILY RNA-binding domain, RBD 22 137 IPR035979 GO:0003676
Dere07g0323 265 SMART rrm1_1 35 108 IPR000504 GO:0003723
Dere07g0323 265 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 139 IPR027157 GO:0000339|GO:0005846|GO:0045292
Dere07g0323 265 FunFam Nuclear cap-binding protein subunit 2 4 143 - -
Dere07g0323 265 MobiDBLite consensus disorder prediction 187 206 - -
Dere07g0323 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0323 Dere-ChrDere07 6189556 6194434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0323 31 122 Eukaryotic Initiation Factors Gene Family AT1G49760 29.348 5.06e-08 51.6