Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0305 ATGCTACACAGTCAGAGAAAGACCATCAAACCTGATAACAAATTGTTCTTCTCCACTGGGCCCTCTAAAAGCTCTAGATCCTCTGAACCTAGCGAACAATCTGGAAAACAAGGGTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATACTGAAGCAACAACAACACTAGAAACTGAAACTGAGTTCTCTAAAGATGCTCGAGCTATCCGTAAGAGAGCTTTAAAGCAAGCGGAGGAGAAGTTGAAGGGAAAGGGCACGAATGCTGGAGATGAAAAATTGTACAAAGGCATCAGCAGTTACACAGATTACAAGGCTGGTTTTCGTAGAGAACAAACAATTGCTAGTGAGAAAGCTGGTGGGTCACATGGGCCGCTTAGGGCTTCAGCTCATATAAGAGTGTCAGCAAGATTTGATTATCAGCCAGACATATGTAAGGATTACCTGGAGACTGGGTACTGTGGGTATGGTGATTCATGTAAGTTTATGCATGACCGGGTTGATTATAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCAGAAAAAGCAAGGAGGATGAAATTAGCTGTGCAGGGGGGGATCCAGATGAGGATGGTGCTGAGTTGA 618 0.4385 MLHSQRKTIKPDNKLFFSTGPSKSSRSSEPSEQSGKQGFQFESSKEIQVQHDTEATTTLETETEFSKDARAIRKRALKQAEEKLKGKGTNAGDEKLYKGISSYTDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYLETGYCGYGDSCKFMHDRVDYKSGWQLEKEWEEAEKARRMKLAVQGGIQMRMVLS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0305 205 Gene3D - 133 196 - -
Dere07g0305 205 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Dere07g0305 205 MobiDBLite consensus disorder prediction 1 64 - -
Dere07g0305 205 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Dere07g0305 205 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Dere07g0305 205 MobiDBLite consensus disorder prediction 11 56 - -
Dere07g0305 205 PANTHER ZINC FINGER PROTEIN 183 2 188 IPR039971 -
Dere07g0305 205 SUPERFAMILY CCCH zinc finger 139 172 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0305 Dere-ChrDere07 5938423 5939040 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0305 1 194 C2H2 Transcription Factor Family AT1G01350 70.103 9.09e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere07g0305 zf-CCCH 9.2e-11 CL0537