Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0289 ATGGTTGATGCTGAGAAGGTCAACAACAGGGGGATCGGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTTGGAGGGCTTACTGTCCGAAGGGCTTGCTATGGTGTCCTTAGGTTTGTTACGGAAAGTGGTGCCAAAGGTTGTGAGGTTATTGTTAGTGGTAAGCTCAGGGCTCAGCGTGCCAAATCTATGAAATTCAAGGATGGGTACATGATATCATCCAATCAGCCTGTCAAGGAATATATTGACTCTGTTGCGAGGCATGTGCTTCTGAGACAGGGTGTTCTTGGTATCAAGGTGAAAATTATGCTTGATTGGGATCCTAAGGGCAAGCAAGGCCTAACTAAACCCATTCCGGATCTTGTCACCATCCACCCACCAAAAGGAGGAAGACGAAGATGGCTACCACCTCCGTTTCTACGATCACCACTCTTTTCTTCCTTCTCCTCTTCGTCTACTACGTGGACTCTTTCTACCTTCCCAACAGCAATCCCATCCTCAGCTTGGTCAACAACACCCGGAGAACTCAAGCCGCCTGTAGCTGCTACTTTGCATGGTTCTGGAAAGCATCCTCGGCTCATGCCTTCAACTCCTCGGTGGGCCGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGA 645 0.4868 MVDAEKVNNRGIGAIAQAESLRYKLLGGLTVRRACYGVLRFVTESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSNQPVKEYIDSVARHVLLRQGVLGIKVKIMLDWDPKGKQGLTKPIPDLVTIHPPKGGRRRWLPPPFLRSPLFSSFSSSSTTWTLSTFPTAIPSSAWSTTPGELKPPVAATLHGSGKHPRLMPSTPRWAVANGAGVILSV 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0289 214 SUPERFAMILY Ribosomal protein S3 C-terminal domain 9 107 IPR036419 -
Dere07g0289 214 Pfam Ribosomal protein S3, C-terminal domain 22 104 IPR001351 GO:0003735|GO:0006412
Dere07g0289 214 ProSitePatterns Ribosomal protein S3 signature. 63 99 IPR018280 -
Dere07g0289 214 PRINTS Protein GIGANTEA signature 186 204 IPR026211 GO:2000028
Dere07g0289 214 PRINTS Protein GIGANTEA signature 204 214 IPR026211 GO:2000028
Dere07g0289 214 FunFam 40S ribosomal protein S3 9 139 - -
Dere07g0289 214 Gene3D - 9 133 IPR036419 -
Dere07g0289 214 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0289 Dere-ChrDere07 5394573 5395566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0289 4 130 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.252 4.97e-75 225