Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0281 ATGGCGGGACCTATTCTTCGTTCTCTCTGGTCCTCAACCAGAAAATCTTTTTCCTCTTCGTCATCTCCTTTCACCCCATATCGTTCATTGCCGCGAGCCCGCGCCGTCTCACGTGCCTTCTCTGCAGTTCCTGCTACCGCCGCCGCTACCGCCGAACCGAACAGCGCCCTCAGCCCCAGCCGCCTCCGCAACGTCGCCGTGATTGCTCATGTTGACCATGGCAAGACCACCCTCATGGATCGACTGCTTCGTCAGTGTGGTGCCGACATACCTCACGAGCGCGCCATGGATTCTATCAGTCTGGAGCGCGAGCGTGGTATCACGATCGCTTCCAAGGTTACATCAGTTTCATGGAAGGATAATGAGCTAAACATGGTTGATACACCTGGGCATGCAGATTTTGGTGGTGAAGTTGAGCGAGTTGTTGGTATGGTTGAGGGAGCAGTATTGGTCGTAGATGCTGGTGAAGGCCCACTTGCGCAAACGAAATTTGTTCTTGCAAAAGCCTTAAAATATGGTCTACGGCCTCTTCTTCTTTTGAACAAAGTAGACCGACCTGCAGTTTCTGAGGAGAGATGTAATGAAGTCGAGAGTCTGGTGTTTGATCTTTTTGCCAACCTTGGTGCTACAGAGGAGCAACTAGACTTTCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTTTACCAAAGATCCTCCTGCTGAGGCAAAAAATATGTCACAGCTTCTTGATGCCATTGTATCACATGTACCCCCACCAAAAGCAAACATTGATGCGCCTTTCCAAATGCTGGTTTCAATGATGGAACGGGATTTCTATCTTGGGCGAATTTTGACTGGACGTATTCATTCTGGGATCGTTCGTGTAGGTGACAGGGTTCATGGTCTAAGTAACAAAGATTCTGGTGTAGTGAAGATTGAAGATGGAAAGGTGGTGAAATTAATGAAGAAGAAAGGTACAAATATGGTTCCAATTGATTTTGCTGGAGCTGGTGATATAATTTCAATGGCTGGGTTGGCAAGCCCAATAATAGGCCACACAGTAGCAACTGCAGAGGTTATGTCTGCATTGCCCACAATTGAGTTGGATCCTCCCACAATTTCCATGACTTTTGGTGTGAATGACTCTCCATTAGCTGGTCGTGATGGTACTCATTTGACTGGAGGAAAAATTGGAAGCCGGCTGATGGCTGAAGCTGAAACAAACATTGCTATAAATGTGCTTCCAGGCTTATCAGATTCATATGAAGTTCAGGGAAGAGGAGAGCTACAATTGGGTATCCTAATTGAGAATATGAGGCGTGAAGGATTTGAGTTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGAAAGTGGTCAGAAACTTGAGCCAATTGAAGAAGTTACAATTGAGGTAAATGATGAGCACGTTGGGTTAGTTATGGAGGCCTTGTCTCATAGGCGAGCTGAAGTTATTGACATGGGCCCTGTCTCAGGAACTGTTGGTCGGACTAGATTGTCTTTGACTTGTCCATCAAGGGGCTTGGTTGGATACAGGAGTGTGTTCAGCAGTGACACACGTGGAACTGGCTTCATGCATCGTGCTTTCCTTAAGTATGAACAATTTCGAGGTCCTCTTGGCAATGTCAGGAAAGGAGTATTGGTATCGATGGGTTATGGTACGATTAGAGCTTATGCATTGATGAGTTTAGAAGCTCGTGGGACTCTATTTGTAACACCAGGAATGGAGACATACGATGGAATGATTGTTGGTGAACACTCACGAGATACAGATCTTGATGTCAATCCAGTGAGAGCTAAGGAACTTACAAATATTCGTGCTGCTGGCAGTGATGAAAATGTGAAGCTGTCTCCCCCGCGCCTTATGACCCTTGAAGAAGCTATAGGATATGTAGCTTCGGATGAGCTTATTGAGGTGACTCCAAAGGCTATACGGTTAAGGAAGAAATATCTTGATGTTAACAAGCGTAAAAGCATGAGTAAAAAGCCAAAGGAATGA 2013 0.4585 MAGPILRSLWSSTRKSFSSSSSPFTPYRSLPRARAVSRAFSAVPATAAATAEPNSALSPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTSVSWKDNELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPLLLLNKVDRPAVSEERCNEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTFTKDPPAEAKNMSQLLDAIVSHVPPPKANIDAPFQMLVSMMERDFYLGRILTGRIHSGIVRVGDRVHGLSNKDSGVVKIEDGKVVKLMKKKGTNMVPIDFAGAGDIISMAGLASPIIGHTVATAEVMSALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGSRLMAEAETNIAINVLPGLSDSYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTESGQKLEPIEEVTIEVNDEHVGLVMEALSHRRAEVIDMGPVSGTVGRTRLSLTCPSRGLVGYRSVFSSDTRGTGFMHRAFLKYEQFRGPLGNVRKGVLVSMGYGTIRAYALMSLEARGTLFVTPGMETYDGMIVGEHSRDTDLDVNPVRAKELTNIRAAGSDENVKLSPPRLMTLEEAIGYVASDELIEVTPKAIRLRKKYLDVNKRKSMSKKPKE 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0281 670 CDD BipA_TypA_II 265 362 IPR047042 -
Dere07g0281 670 CDD BipA_TypA_C 461 541 IPR035651 -
Dere07g0281 670 CDD TypA_BipA 62 257 IPR047041 -
Dere07g0281 670 Pfam Elongation factor Tu domain 2 279 352 IPR004161 GO:0005525
Dere07g0281 670 Gene3D - 60 258 IPR027417 -
Dere07g0281 670 Pfam Elongation factor Tu GTP binding domain 61 255 IPR000795 GO:0003924|GO:0005525
Dere07g0281 670 FunFam GTP-binding protein TypA 370 479 - -
Dere07g0281 670 SUPERFAMILY EF-G C-terminal domain-like 461 577 IPR035647 -
Dere07g0281 670 PRINTS GTP-binding elongation factor signature 104 112 IPR000795 GO:0003924|GO:0005525
Dere07g0281 670 PRINTS GTP-binding elongation factor signature 140 151 IPR000795 GO:0003924|GO:0005525
Dere07g0281 670 PRINTS GTP-binding elongation factor signature 64 77 IPR000795 GO:0003924|GO:0005525
Dere07g0281 670 PRINTS GTP-binding elongation factor signature 124 134 IPR000795 GO:0003924|GO:0005525
Dere07g0281 670 PRINTS GTP-binding elongation factor signature 176 185 IPR000795 GO:0003924|GO:0005525
Dere07g0281 670 NCBIfam small GTP-binding protein domain 63 201 IPR005225 GO:0005525
Dere07g0281 670 Gene3D - 452 546 - -
Dere07g0281 670 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 59 232 - -
Dere07g0281 670 SUPERFAMILY EF-G C-terminal domain-like 367 450 IPR035647 -
Dere07g0281 670 Gene3D bipa protein 547 662 IPR042116 -
Dere07g0281 670 FunFam Elongation factor family protein 259 363 - -
Dere07g0281 670 Pfam Elongation factor G C-terminus 459 542 IPR000640 -
Dere07g0281 670 SUPERFAMILY Translation proteins 207 363 IPR009000 -
Dere07g0281 670 Gene3D Elongation Factor G (Translational Gtpase), domain 3 370 654 - -
Dere07g0281 670 FunFam GTP-binding protein TypA 452 546 - -
Dere07g0281 670 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 60 258 IPR000795 GO:0003924|GO:0005525
Dere07g0281 670 FunFam GTP-binding protein TypA 61 258 - -
Dere07g0281 670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 267 IPR027417 -
Dere07g0281 670 CDD BipA_III 369 446 IPR047043 -
Dere07g0281 670 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 97 112 IPR031157 -
Dere07g0281 670 Gene3D Translation factors 259 363 - -
Dere07g0281 670 FunFam GTP-binding protein TypA 547 633 - -
Dere07g0281 670 NCBIfam translational GTPase TypA/BipA 62 662 IPR006298 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0281 Dere-ChrDere07 5188214 5197669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0281 61 185 Eukaryotic Initiation Factors Gene Family AT3G22980 43.511 4.54e-26 112