Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0267 ATGGCTACTCCCGACGACAACGATCGTTTCATGTTCCCGGGAAATTTTCCAAGAAGATCTGAGTCCGTTCACAGCGACATGAACAGCAAGATCTTGCTCACAGCCATCATCTCCTTATCAGTCGTCTTAGTCCTCGTTTTCGCCCTTCATCTCTACGCAAGGTACGTCCTCCGCCGCCAAGCCCGCCGCCGCACCGCTATACACCATCTCAGCCTCGCGGTGGCCCACTACTCCTCCGGCGAGACTCCCCACAACACCGGCCTCGACCCCTCACTCATTGCCTCCTTGCCCATCTTCGTCTTCAAACGTAAAAAAGACAAATCCCAGAACGACACCGACGCCGACAACGACGATTCCTCTGTTATAGAATGCTCTGTTTGTTTGAGCAATCTGGAGGACGAAGAGACGGCGAGGATGCTGCCCAATTGCAAGCACGTTTTCCACGTGGGCTGTATTGACACGTGGTTGGCTTCTCATTCGACGTGCCCAGTTTGTCGAACCATGGCTCAGCCGGTGATCGAGCCGCAGCCTCGGGAGGGTCCGGTTCGGGTAGCTCTGCCTGCTGCGGATGACGCACCCACGGCTCCGCCCATTGTGGAGCCTGTTGTGGAAGGTACATCAGATGGCGGCGCGGCTAAAATTAGTGGCTCGAACTCAAGGTTGAGCTCCTTCAGAAGGATTCTCAGCAGGGAAAGATCGTTCAGAAGAATCCAACCTTCTTCTTCCTCTAGCCATGATGATAATACTGATCGTGATTTGGAGAGACAGTGA 771 0.5435 MATPDDNDRFMFPGNFPRRSESVHSDMNSKILLTAIISLSVVLVLVFALHLYARYVLRRQARRRTAIHHLSLAVAHYSSGETPHNTGLDPSLIASLPIFVFKRKKDKSQNDTDADNDDSSVIECSVCLSNLEDEETARMLPNCKHVFHVGCIDTWLASHSTCPVCRTMAQPVIEPQPREGPVRVALPAADDAPTAPPIVEPVVEGTSDGGAAKISGSNSRLSSFRRILSRERSFRRIQPSSSSSHDDNTDRDLERQ 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0267 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 171 IPR013083 -
Dere07g0267 256 Pfam Ring finger domain 123 166 IPR001841 -
Dere07g0267 256 CDD RING-H2_EL5-like 123 166 - -
Dere07g0267 256 SMART ring_2 124 165 IPR001841 -
Dere07g0267 256 MobiDBLite consensus disorder prediction 232 256 - -
Dere07g0267 256 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 171 - -
Dere07g0267 256 SUPERFAMILY RING/U-box 123 177 - -
Dere07g0267 256 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Dere07g0267 256 FunFam E3 ubiquitin-protein ligase ATL6 76 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0267 Dere-ChrDere07 5021598 5022368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0267 26 256 C3H Transcription Factor Family AT2G42360 46.352 6.32e-53 170