Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0254 ATGGAAGCATATGATTGGAGTTCAGGTCTTCGTGGAAATGCCTCAGAGAAAAGTCCCAATGGTTTTCTGGTTAACTCTGCTGCAATAGGAAGTGGGTTTGCTTCATCTTCATCTCTGGTTTTGGATAGAGAGAGGGGGGAGCTTGTGGCTGCCCCTGTCAAATTGGAACGCAAAGGTGTGTCCACTGAGAGAAGTATTGAAGCTTTGAAGAACCATAGCGAGGCAGAGAGGAGGAGGAGAGCAAGGATTAATGCACATCTCGACATGCTTAGGAGTGTAATTCCTGGTGCTAACAAGATGGACAAAGCGTCATTACTTGCTGAGGTTATCAGACATTTGAAAGAGCTGAAAAGGAATGCAGCCCAAGCATGTGAAGGGTTGATGATACCAAAGGACAACGATGAAATAAGAGTTGAAGAACAGGAAGGTGGGTCAAATGGTTTCCCTTATTCGATTAAGGCATCTCTAAGCTGTGAATATAAACCTGGCTTGTTGTCTGATATAAGACAAGCACTTGATGCCCTTCATCTTAGGATAATGAGGGCAGAAATTGCAACCTTAGGAGGCAGGATGAAGAATGTCTTTGTTATAATTAGCTGTAAAGAACAGAAATTTGAAGATGCTGCATACCGTCGGTTTCTTGCTGGCTCTGTTCACCAAGCTATTAGGTCTGTACTGGATAGATTTTCTTCTTCACAAGACCTCTTGGAAACCAGAAAGAGACGGAGGATTTCAATATTCAGTTCATCACCTTTAGGAGACTTATTGTGA 771 0.4293 MEAYDWSSGLRGNASEKSPNGFLVNSAAIGSGFASSSSLVLDRERGELVAAPVKLERKGVSTERSIEALKNHSEAERRRRARINAHLDMLRSVIPGANKMDKASLLAEVIRHLKELKRNAAQACEGLMIPKDNDEIRVEEQEGGSNGFPYSIKASLSCEYKPGLLSDIRQALDALHLRIMRAEIATLGGRMKNVFVIISCKEQKFEDAAYRRFLAGSVHQAIRSVLDRFSSSQDLLETRKRRRISIFSSSPLGDLL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0254 256 CDD ACT_UUR-ACR-like 155 197 - -
Dere07g0254 256 Pfam Helix-loop-helix DNA-binding domain 71 116 IPR011598 GO:0046983
Dere07g0254 256 SMART finulus 73 122 IPR011598 GO:0046983
Dere07g0254 256 SUPERFAMILY ACT-like 155 199 IPR045865 -
Dere07g0254 256 PANTHER TRANSCRIPTION FACTOR BHLH30 33 246 IPR045847 GO:0003700|GO:0006355
Dere07g0254 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 122 IPR036638 GO:0046983
Dere07g0254 256 Gene3D - 62 124 IPR036638 GO:0046983
Dere07g0254 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0254 Dere-ChrDere07 4898330 4899877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0254 54 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 41.573 8.55e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere07g0254 HLH 1.5e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0254 07 4898330 4899877 Dere07g0254 07 4898330 4899877 ECH