Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0252 ATGTCGCAGACTGGGAAGTCTATGCAGGAACTGAGGTTCGATTCTCTCGCTACTCGATTCCGGGATTTGTTGAGTTCTGCCGAGGACAAGCCTGATTTTAAAGAACTCGATCTGGGTTCTCCAGTTTCGCCATTGAAAACACGCGCCACAATTAATGCCACCAGCGGCGGAGCTTCCAGCACCCCGAGCTGTAGCTCGAGCTCCTCCACCGGCTCGGTTTCCGGAAGCAGAAACTCCAACGCCAAATTGCCCAAAAAACCAGACGGGAAGCGAAACAACCGCTCGGGCGAGCTCACTGCGACCAATCCAATCGCCTCCGAGAGCCTCCGATCCGCTTCGGCAACCCAAAACTCCAAGCCTGGTCATCGGAGATCGGTTTCCGCTGGGGCCCCGTTAATATACTCTGGGGGAAGTTTTAGCAGCTCGGGGAATAATAGTTACGCAAACGGTGCAACTTCAGGGACCAATTTGCCCACAACCGGCAATATTTTCCAGACAGGAAAGATCCTCACGCCCGGTCTGGCGTCTCGAGCGTCCAACAGAACCGATGTTTTGGGTTCGGGGACGGTCAACTACGGCCAAGGTAACATAATGCGTGGTGGCGGAAAATTAGGCAATGGAGGGCACGTCGTTGTCGAAGACAATGTCACGGGGAATTCTCAGCTCGGAGGGGTTTCGGGTATTGTGAAGCGGTCAATGAGCGGTACTGATCCAGAGGAGGTGAAAAAAGCTGGAAATGAACTATACAGAAGCGGTTACTTTGCGGAGGCATTGTCGTTGTACGATCGTGCTATTTCCATATCACCGAATAATCCAGCTTACCGGAGTAATCGGGCGGCGGCGTTAACGGCGTTGGGGAGGTTGGCTGCGGCGACGAAGGAGTGTGAAGAGGCTGTGAAATTGGACCCTGGTTATGCCAGGGCTCACCAGAGACTTGCTTCTCTTTACCTGCGCTTTGGCCAGGTTGAAAATGCCCAGAGCCACCTCTGTCTCCCTGGAAAACAGGTGGATCAATCTGAACTGCACAAGCTGAGGCTTTTGGCGAAGCATCTGAACCGATGTGCTGAGGCACGAAAGATAGGTGATTGGAAGAGTGCACTTAGAGAATCAGACGCAGCCATTGCTGTTGGAGCAGATTTCTCGCCTCAGCTTGTTGCTTGTAAAGCTGAAGCCTATTTGAAACTTTACCTACTTGAGGACGCTGAGTCTACCATCTCAAACATTCCAAAGCTGGAAGGTTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCTTATGTGCCTTTTGTTCGAGCTCAGGTTGAGATGGCCCTGGGAAGGTTTGAGAATGCAGTAGCAGAAGCAGAAAGGGCTAATTTGATAGATTATAGTAATGTGGAAGTTGCAAGAGTTGTAAGTACTGTGAAAATGGTGGCAAGGGCTCGTTCTCGAGGCAATGAGCTCTTCGCCTCCGGAAAATTTTCTGAAGCTTGCTCTGCTTATGGAGAAGGCCTCAAATATGTCAGTTCCAACTATGTTCTATACTGTAATAGAGCTGTTTGCTGGTCTAAACTTGGACTGTGGGAAAAGTCTGTCAAGGACTGCAACCAAGCTCTTGGCATTCAACCAAATTGCACCAAGGCCCTTTTCCGTAGGGCTGTCTCGAATGCAAAGCTTGAAAGGTGGGCAGAGGCTGTAAAAGATTATGAGGCTTTAAAGCGCGAACTTCCCAGAGACAGTGAAGTTGCTGAGTCTCTCCGTCAGGCTCAACTTGCATTGAAGAAATCTCGTGGGGAAGTTTATGGTACAAAGCTTGGTATTGAGGTTGAAGAGGTTTCTACATTAGATAGATTCAAAGCTGCAATTGCTTCTTCTGGTGTCTCAGTGGTTCATTTCAAAGAGGCATCTAATGAACTATGTCAGGAAATATCCCCTTTTATAAATATGCTCTGCATAAGATACCCATCTGTTAAGTTCATCAAGGTGGATGTGGAAGAGTGTGTAAGTGTAGCAAAAGCTGAGAGCATAAGAACTGTGCCAACTTTCAAAATATATGCAAACGGAGAGAAGGTGAAGGAGATGATCAGGCCAAGCCATCAGTTCTTGGAGGACTCAGTGAGAAACTGTAGTAATCTCTAG 2121 0.4875 MSQTGKSMQELRFDSLATRFRDLLSSAEDKPDFKELDLGSPVSPLKTRATINATSGGASSTPSCSSSSSTGSVSGSRNSNAKLPKKPDGKRNNRSGELTATNPIASESLRSASATQNSKPGHRRSVSAGAPLIYSGGSFSSSGNNSYANGATSGTNLPTTGNIFQTGKILTPGLASRASNRTDVLGSGTVNYGQGNIMRGGGKLGNGGHVVVEDNVTGNSQLGGVSGIVKRSMSGTDPEEVKKAGNELYRSGYFAEALSLYDRAISISPNNPAYRSNRAAALTALGRLAAATKECEEAVKLDPGYARAHQRLASLYLRFGQVENAQSHLCLPGKQVDQSELHKLRLLAKHLNRCAEARKIGDWKSALRESDAAIAVGADFSPQLVACKAEAYLKLYLLEDAESTISNIPKLEGCSQTKFFGMVGEAYVPFVRAQVEMALGRFENAVAEAERANLIDYSNVEVARVVSTVKMVARARSRGNELFASGKFSEACSAYGEGLKYVSSNYVLYCNRAVCWSKLGLWEKSVKDCNQALGIQPNCTKALFRRAVSNAKLERWAEAVKDYEALKRELPRDSEVAESLRQAQLALKKSRGEVYGTKLGIEVEEVSTLDRFKAAIASSGVSVVHFKEASNELCQEISPFINMLCIRYPSVKFIKVDVEECVSVAKAESIRTVPTFKIYANGEKVKEMIRPSHQFLEDSVRNCSNL 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0252 706 CDD TRX_family 612 691 - -
Dere07g0252 706 MobiDBLite consensus disorder prediction 26 129 - -
Dere07g0252 706 SUPERFAMILY TPR-like 239 328 IPR011990 GO:0005515
Dere07g0252 706 MobiDBLite consensus disorder prediction 94 123 - -
Dere07g0252 706 MobiDBLite consensus disorder prediction 45 81 - -
Dere07g0252 706 SUPERFAMILY TPR-like 350 461 IPR011990 GO:0005515
Dere07g0252 706 Gene3D Tetratricopeptide repeat domain 236 591 IPR011990 GO:0005515
Dere07g0252 706 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 28 701 IPR044534 -
Dere07g0252 706 Pfam TPR repeat 245 286 - -
Dere07g0252 706 Pfam Thioredoxin 608 690 IPR013766 -
Dere07g0252 706 Gene3D Glutaredoxin 592 704 - -
Dere07g0252 706 SMART tpr_5 272 305 IPR019734 GO:0005515
Dere07g0252 706 SMART tpr_5 540 573 IPR019734 GO:0005515
Dere07g0252 706 SMART tpr_5 238 271 IPR019734 GO:0005515
Dere07g0252 706 SMART tpr_5 506 539 IPR019734 GO:0005515
Dere07g0252 706 SMART tpr_5 472 505 IPR019734 GO:0005515
Dere07g0252 706 Coils Coil 432 452 - -
Dere07g0252 706 FunFam TPR repeat-containing thioredoxin TTL4 597 704 - -
Dere07g0252 706 ProSiteProfiles TPR repeat profile. 238 271 IPR019734 GO:0005515
Dere07g0252 706 SUPERFAMILY Thioredoxin-like 510 700 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0252 Dere-ChrDere07 4878531 4882644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0252 239 329 U-box Gene Family AT3G07370 29.670 1.69e-06 48.5