Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0228 ATGGCGGCGATGAGAGCGGCAGTGGCGGCGCCTCGCGGTCTACGGCGGCTCTTCTCAACCACTTCAACTTCAAGCTTCATTCCTCCTCCGCCCACGGCGGCAGCTTCTGCTCGAGAGAAGGCGGAGCCGAGTACCAACCTCTTCGTCTCTGGGCTTAGCAAACGTACTACTACAGAAAGACTGCAGGAGGCATTTTCGCAGTTTGGTGAAGTTGTTCATGCTAGAGTGGTAACTGACAGAGTATCAGGTTACTCTAAAGGGTTTGGTTTTGTAAGATATGCCACCATAGAAGAGGCTGCAAAAGGCATTGAAGGCATGGATGGAAAGTTTTTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCAGGACAACCTGGACAACCTATGCCTCCTTCATATGGCCAGCAGTGA 426 0.5141 MAAMRAAVAAPRGLRRLFSTTSTSSFIPPPPTAAASAREKAEPSTNLFVSGLSKRTTTERLQEAFSQFGEVVHARVVTDRVSGYSKGFGFVRYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQPGQPMPPSYGQQ 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0228 141 SMART rrm1_1 46 119 IPR000504 GO:0003723
Dere07g0228 141 MobiDBLite consensus disorder prediction 122 141 - -
Dere07g0228 141 SUPERFAMILY RNA-binding domain, RBD 27 138 IPR035979 GO:0003676
Dere07g0228 141 MobiDBLite consensus disorder prediction 21 42 - -
Dere07g0228 141 FunFam RNA recognition motif-containing protein 24 134 - -
Dere07g0228 141 MobiDBLite consensus disorder prediction 123 141 - -
Dere07g0228 141 Gene3D - 32 141 IPR012677 -
Dere07g0228 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 113 IPR000504 GO:0003723
Dere07g0228 141 PANTHER NUCLEOLAR PROTEIN 8 26 136 - -
Dere07g0228 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0228 Dere-ChrDere07 4594056 4597677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0228 46 122 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 1.56e-10 55.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere07g0228 07 4594056 4597677 Dere07g0228 07 4594056 4597677 ECH