Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0171 ATGAGCAGCAACATCAGCAATTTCGCGCTCTCACCGGGGTCTCGGCGAACTGGTGTTAGAGCCTATGATTACCGTACTCCTCACAGTAGTGACTCCTTTGAGGTGCCTGTGTTCTACCGATCTCATTCTAGACGTGCCGCTCCTTATCACCAGGATGATAGGACATCAAGGGCACTGAATTCCGGGTGGTTTCTGGAAGATGGAACGCATGCAGGACTCTACAGCATACCTGAGTTTCCAACACAATCACATCGAATTTTCATTCTTGATGGAGATACAAGAAGGGGATCCAACCCCAGGCCCAGAGAAACTCACCTACAATCATTACCGACTCCAAGATCCACACGCCAAACAAACCCACAAGCTCCAACGATGCTTGAAGATTCCAAATCCAAAGCCCTGAGCAAGCTAAAGAAAGAAATCTACGACCCCAATCCAACCACAAAGTTGCTAGCGAAGAAAGTGAGCTCATTCTACAGAGACATGAATGGTACGAACGCTTTGAAGGAGATGGAGAGTAAGAATCAGGAAAAGAATGAAGATGGCAAGAGGTGTGCAATATGCTTGGAGGATTTTGAACCTAAGCAGGAGGTGATGGTGACACCTTGCAAGCACATGTTTCATGAGGATTGTATAGTGCCATGGGTGGCAAGCCAAGGTAAGTGTCCAATCTGCAGGACTGTGATTTGCGAGAGGGCAGGGGATAATCAATCATCGTCCCTCAACAACAATGACATTCGTAGTATGTCACACAATGACATAATTGCAAGAGAGCTCTTGTCCATTTTGAGGGCCATGGATGAAGCTTTTCAATGGGGGCACTGA 825 0.4703 MSSNISNFALSPGSRRTGVRAYDYRTPHSSDSFEVPVFYRSHSRRAAPYHQDDRTSRALNSGWFLEDGTHAGLYSIPEFPTQSHRIFILDGDTRRGSNPRPRETHLQSLPTPRSTRQTNPQAPTMLEDSKSKALSKLKKEIYDPNPTTKLLAKKVSSFYRDMNGTNALKEMESKNQEKNEDGKRCAICLEDFEPKQEVMVTPCKHMFHEDCIVPWVASQGKCPICRTVICERAGDNQSSSLNNNDIRSMSHNDIIARELLSILRAMDEAFQWGH 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0171 274 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Dere07g0171 274 MobiDBLite consensus disorder prediction 91 128 - -
Dere07g0171 274 Pfam Ring finger domain 184 226 IPR001841 -
Dere07g0171 274 FunFam RING/U-box superfamily protein 169 244 - -
Dere07g0171 274 SUPERFAMILY RING/U-box 175 234 - -
Dere07g0171 274 MobiDBLite consensus disorder prediction 102 128 - -
Dere07g0171 274 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 56 227 - -
Dere07g0171 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 235 IPR013083 -
Dere07g0171 274 SMART ring_2 185 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0171 Dere-ChrDere07 3725438 3727522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0171 102 274 C3H Transcription Factor Family AT3G58720 40.449 2.18e-41 141