Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0116 ATGGCTGTTTCAGATACTGATAAGCATAAGAAGAAGGTGGTCGTGGTAATGACAGTTACTCTTCCTTTGGTTCTTGTGATGCTTTTGACTTTCTCTTGCATTCATAGGAGGAATAGAAAGCGAAGAGAGAATACTTCAACAGAGAATAGTCATGAAGGTGAACAAGAAGACTTGGAACTGCCTTTCTTTGACCTTGCCACAATTGTCCGTGCAACTAATGACTTCTCAAGTGACAAGAAGCTTGGCCAAGGTGGTTTTGGACCAGTATACAGGGGTACACTGAGAGATGGACAAGAGATTGCTGTGAAGAGGTTATCTCAGACTTCCGGACAAGGATTACAAGAATTTAAGAATGAAGTTATAATGTGTGCCAAACTTCAGCATCGAAATCTTGTTAAAGTTCTTGGTTGTTGCATTCAAGGAGACGAGAAAATGCTCATATATGAATACATGCCCAACAAAAGCCTAGATTCCTTTCTTTTTGATTGTCATCACAGTAAATCCCTAAATTGGCCTCAGCGCTTTCACATTATATTTGGAATTGCTCGAGGGCTTCTCTATCTTCACCAAGATTCCAGACTAAGGATCATACATAGAGATCTTAAAGCAAGTAATATTTTATTAGATAGGGAGTTGAATCCAAAAATTTCAGATTTTGGCATCGCAAGAATGTTTGGAGGAGACCAATTTGAAGGAAGTACAAACAAAGTGGTTGGCACATATGGTTATATGGCACCAGAATATGTCGTTCATGGGCTATTCTCCATTAAATCTGATGTGTTTAGTTTTGGTGTATTACTTCTGGAGATAGTAAGTGGAAAGAAAAACCGAGGGGCTTCCTACCCAAATTATGGTTTTAATCTTATCGGTCATGCTTGGAGACTGTGGAAGGAGGATAACTCAAGGGAATTAATTGATGCTTGTCTGGGCGAGACTTTCAATTTATGGGAAGTGTTACGCTGCATCCATGTTGCTCTTCTATGTGTACAGCTACATCCTGAGGATAGGCCAAACATGGCGTCAGTACATGTAATGTTGAGCAGTGAGAGCAACTTGCCTCAGCCAAAGGAGCCTGGATTCCTGATAGAAACGGCCTCAGTTGAAGGAGAGTATTATTCTAACATGCAAATGACTTCTTCTTCAAGTAATGAAATAACCATGACTCTGCTACAGGCCAGATAG 1182 0.4027 MAVSDTDKHKKKVVVVMTVTLPLVLVMLLTFSCIHRRNRKRRENTSTENSHEGEQEDLELPFFDLATIVRATNDFSSDKKLGQGGFGPVYRGTLRDGQEIAVKRLSQTSGQGLQEFKNEVIMCAKLQHRNLVKVLGCCIQGDEKMLIYEYMPNKSLDSFLFDCHHSKSLNWPQRFHIIFGIARGLLYLHQDSRLRIIHRDLKASNILLDRELNPKISDFGIARMFGGDQFEGSTNKVVGTYGYMAPEYVVHGLFSIKSDVFSFGVLLLEIVSGKKNRGASYPNYGFNLIGHAWRLWKEDNSRELIDACLGETFNLWEVLRCIHVALLCVQLHPEDRPNMASVHVMLSSESNLPQPKEPGFLIETASVEGEYYSNMQMTSSSSNEITMTLLQAR 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0116 393 Pfam Protein tyrosine and serine/threonine kinase 77 343 IPR001245 GO:0004672|GO:0006468
Dere07g0116 393 Gene3D Phosphorylase Kinase; domain 1 32 150 - -
Dere07g0116 393 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 38 150 - -
Dere07g0116 393 Gene3D Transferase(Phosphotransferase) domain 1 151 357 - -
Dere07g0116 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Dere07g0116 393 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 151 354 - -
Dere07g0116 393 Pfam Domain of unknown function (DUF3403) 347 393 IPR021820 GO:0004674
Dere07g0116 393 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 392 - -
Dere07g0116 393 ProSiteProfiles Protein kinase domain profile. 75 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g0116 393 SMART serkin_6 75 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere07g0116 393 CDD STKc_IRAK 81 346 - -
Dere07g0116 393 SUPERFAMILY Protein kinase-like (PK-like) 58 354 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0116 Dere-ChrDere07 2916591 2918847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0116 13 364 Receptor kinase-like Gene Family AT4G23230 51.841 2.13e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere07g0116 PK_Tyr_Ser-Thr 6.4e-50 CL0016