Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0089 ATGGCCAATTCATCCCCACTCAGCTCACGTACTTCACGCATGCACTACTACACCACAGACGACGACGTCGAAGACGACAACCACTACGTTAGTGACACCGAGGACGAGGAAGAACAAAACGACGTTGTCGACGAACAAAAAGACCATGACAAGGTCCTAGGGTGTTGGCCAACCGGCGTCGGCGGCTCGGGGTGCGGTTCTCGGCGGGTGGGCTGGGTGGTTGACCCGAGAGCGAAATGGGTTCAAGAATTAAACCGGGTGTTCCTGCTGGTGTCTGCAGCCGGGTTGTTCGTGGACCCGCTCTTCTTCTACGCGCTCTCCTTGAGCGAGACGTGCATGTGCCTCTTCGTCGACGGGTGGTTCGCCGTCACCGTAACGGTGCTCCGGTGCATGACGGACGCGTTGCACGTGTGGAACATGTGGCTTCAGATGAAGATGGTTAAACGATCGTTTGGCGTGGGTTTGGGAAGTGGGTATGCAGACACTCACCCTCACTCTGCTGCTCTTCGCTATCTCAAGGCTAAGAGGGGTTTCTTCTTTGACCTCTTTGTTATTCTTCCTCTACCTCAGATTGTATTATGGGTGACAATTCCGTATCTGTTGGAGAAAGGGTTAGTTACGTTGGTGATGACAGTGTTCTTAATAATGTTCTTCTTTCAATACGTTCCCAAGATCTACCATTCTGTATGCCTCTTGCGTCGCATGCAAAGCCTCTCTGGCTACATTTTTGGAACCGTTTGGTGGGGTATTGCCCTTAACATGATCGCTTACTTTGTGGCTTCCCATGCAGCAGGGGCATGTTGGTACTTACTGGGGATCCAGAGGGCAGCCAAGTGCCTGAAAGAGCAATGTGGGAAGGCCAATGGATGTGGCCTGAGAATTCTGGCATGTAAGGACCCCATTTACTATGGAAGCAGCAGCGTGGTGAGGGAAAGAGAAAGGTTGGCTTGGGCAGAAAATAGGCAAGCCAGGTCTACGTGCTTGGACGATAGCTCTCAGAACTACGACTATGGAGCTTACAAATGGACTGTTCAGCTCGTTGCTAATGATAATCGGCTGGAAAAGATACTCTTCCCTATATTCTGGGGCCTCATGACTCTCAGCACCTTTGGGAACCTTGAGAGCACGACTGAATGGCTTGAAGTTGTTTTCAACATTGTTGTCTTGACCAGTGGCCTTCTCTTGGTCACGATGTTGATCGGAAATATCAAGGTGTTTTTGCATGCAACGACGTCGAAGAAGCAAGCGATGCATCTGAAGATGAGGAACATAGAGTGGTGGATGAGGAAGAGGCAGTTACCGCAATCGTTCCGGCAGCGAGTGCGCAACTACGAACGCCAACGCTGGGCCGCAATGCGAGGGGTTGACGAGTGCCAAATGATCAAAAACCTTCCCGAGGGTCTCCGAAGGGATATTAAATATCATCTCTGTTTGGATTTGGTCCGCCAGGTGCCTCTATTTCAGCACATGGATGATCTGGTCCTCGAAAACATTTGCGACCGCGTCAAGTCCCTCATATTCGCAAAGGGAGAGACTATAACGAGGGAGGGAGACCCAGTTCAGAGAATGCTATTTGTTGTAAGGGGTCATCTCCAAAGCAGCCATTTTCTCAGAGACGGCGTGAAAAGCTGCTGCATGTTAGGACCCGGCAACTTCAGCGGCGACGAGCTACTCTCGTGGTGCCTGAGACGGCCGTTCATCGAGCGTCTTCCGCCGTCGACCTGCACTCTGGTGACGCTCGAAACCACGGAGGCCTTTGGTCTGGAAGCAGAGGACGTGAAGTACGTGACCCAGCATTTCAGATACACCTTCGTGAAGGAGAAGGTGAAGCGAAGCGCCAGGTACTACTCGCCGGGGTGGAGGACCTGGGCCGCCGTCGCCATCCAGTTGGCCTGGAGAAGGTACAAGCATCGCCTCACTCTCACGTCCTTGTCCTTCATAAGGCCTCGGAGGCCTGTGTCTCGATGCTCCTCCATGGGAGAGGATCGGCTTCGGTTGTATACTGCGTTGTTGACCTCTCCTAAGCCTAATCAGGATGATCTTGACTTCTGA 2052 0.5234 MANSSPLSSRTSRMHYYTTDDDVEDDNHYVSDTEDEEEQNDVVDEQKDHDKVLGCWPTGVGGSGCGSRRVGWVVDPRAKWVQELNRVFLLVSAAGLFVDPLFFYALSLSETCMCLFVDGWFAVTVTVLRCMTDALHVWNMWLQMKMVKRSFGVGLGSGYADTHPHSAALRYLKAKRGFFFDLFVILPLPQIVLWVTIPYLLEKGLVTLVMTVFLIMFFFQYVPKIYHSVCLLRRMQSLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCGKANGCGLRILACKDPIYYGSSSVVRERERLAWAENRQARSTCLDDSSQNYDYGAYKWTVQLVANDNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIVVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMRKRQLPQSFRQRVRNYERQRWAAMRGVDECQMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFAKGETITREGDPVQRMLFVVRGHLQSSHFLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSTCTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPVSRCSSMGEDRLRLYTALLTSPKPNQDDLDF 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0089 683 Gene3D Jelly Rolls 484 602 IPR014710 -
Dere07g0089 683 MobiDBLite consensus disorder prediction 1 47 - -
Dere07g0089 683 Gene3D Helix hairpin bin 411 477 - -
Dere07g0089 683 MobiDBLite consensus disorder prediction 25 43 - -
Dere07g0089 683 CDD CAP_ED 486 592 IPR000595 -
Dere07g0089 683 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 48 643 - -
Dere07g0089 683 Pfam Cyclic nucleotide-binding domain 507 594 IPR000595 -
Dere07g0089 683 SUPERFAMILY Voltage-gated potassium channels 79 407 - -
Dere07g0089 683 FunFam Cyclic nucleotide-gated ion channel 1 413 477 - -
Dere07g0089 683 Pfam Ion transport protein 85 403 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Dere07g0089 683 FunFam cyclic nucleotide-gated ion channel 4 484 602 - -
Dere07g0089 683 ProSiteProfiles cAMP/cGMP binding motif profile. 486 565 IPR000595 -
Dere07g0089 683 SUPERFAMILY cAMP-binding domain-like 412 600 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0089 Dere-ChrDere07 2355397 2362796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0089 62 682 Ion Channels AT5G54250 76.839 0.0 1003