Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0078 ATGAACGAGAAGGCCAACGTGTCTAAAGAGCTCAACGCAAAGCATAAGAAGATACTGGAAGGACTTCTTAAACTGCCCGAAAATAGGGAATGTGCTGATTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTGAACCTAGGCATCTTTATATGCATGCAGTGTTCAGGAATACATAGAAGTCTTGGGGTACATATTTCAAAGGTTCGTTCTGCAACTCTGGACACCTGGCTTCCAGAGCAGGTTGCATTCATTCAATCCATGGGAAATGAGAAAGCTAATTGCTACTGGGAAGCTGAGCTACCCCCAAATTATGATAGAGTTGGAATCGAGAATTTTATTCGTGCAAAATATGAAGAGAAGAGATGGATTCCAAGGGATGGAAAACCAAAATCACCTTCTAGGCAGCAGGAAGACAGGACTTCTTCAAATTGGCAGAGGCCTGCAGAAAGAAGTGGGCATGGTTATGCATCTGCTTCTGAGAACACTTTTTATGAAAGGAAGAAAGTTCAGGCATCAAATACTATTCCTGCAATAAGAAGTAATGTTGCTGCTCCTCCAAAAGTACCTGAGCAGGTAACTCCTCTTACAAAACCTCAGCATGTAGAGAAAGTGGAACCAGTGGCACCACAACCACAAGCGGAAACAGCTAAACAGGCTTCTGACATGGCTCAGAATACCCCTTCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCCATGGATGGCCCAAGTGAAAATAGCTCAGAGGAAGCTGGTGCTGCTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAAGCATCAACAACTGAGAAGACTGGTTCCACAAAAGCAGTTGAGAGCACTCCCCAGTCTAATTCTGGAATTGAGGATCTTTTTAAGGATTCGCCTTCAGTAACACTGGTAGTTCCAGAAAAACCACAGAAAGATTTGAAAAATGACATCATGAGCCTTTTTGAGAAGTCCAATATGGTCTCTCCATTTTCTGTGCGTCAGCAGCAGCTTGCCATGCTTGCACAGCAACAGTCCCTTCTAATTGCTGCTGCGGCTAATTCTGCTGGTGGAAACCCCAAGCACCCAGGTGGCACACAACAACCTGGACTGAATGGGTCCAATATTCCTGGTCCAAGTTGGCCAGCTGTTGGCTACCCAATTCCTGGAGTATTGCCCATGGGTGGTCAGGGAGAGCTACAGAAACTTATGCAGAATAGGAGCACGATTCCAGCACATTCAGCAGCAAGTCCTGTGCAGTTTCCAACATCTGGTGTCTATGCAATGGGACAGGTTAGTCCAATTAATGGTATCACAACAACGGGAGTAAATAAACCTCAAACGGCAGCTACAGTGTCATCATCAAGCTCTTCAAAGGCAGCTAAGGATTATGATTTCTCCTCTTTAACACAAGGGATGTTTACCAAACACTGA 1437 0.4475 MNEKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANCYWEAELPPNYDRVGIENFIRAKYEEKRWIPRDGKPKSPSRQQEDRTSSNWQRPAERSGHGYASASENTFYERKKVQASNTIPAIRSNVAAPPKVPEQVTPLTKPQHVEKVEPVAPQPQAETAKQASDMAQNTPSKVDYATDLFNMLSMDGPSENSSEEAGAAADDNNWAGFQSAAEASTTEKTGSTKAVESTPQSNSGIEDLFKDSPSVTLVVPEKPQKDLKNDIMSLFEKSNMVSPFSVRQQQLAMLAQQQSLLIAAAANSAGGNPKHPGGTQQPGLNGSNIPGPSWPAVGYPIPGVLPMGGQGELQKLMQNRSTIPAHSAASPVQFPTSGVYAMGQVSPINGITTTGVNKPQTAATVSSSSSSKAAKDYDFSSLTQGMFTKH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0078 478 CDD ArfGap 19 117 - -
Dere07g0078 478 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Dere07g0078 478 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Dere07g0078 478 MobiDBLite consensus disorder prediction 269 297 - -
Dere07g0078 478 MobiDBLite consensus disorder prediction 361 376 - -
Dere07g0078 478 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Dere07g0078 478 MobiDBLite consensus disorder prediction 355 378 - -
Dere07g0078 478 MobiDBLite consensus disorder prediction 176 226 - -
Dere07g0078 478 MobiDBLite consensus disorder prediction 123 161 - -
Dere07g0078 478 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 478 IPR044520 GO:0005096
Dere07g0078 478 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Dere07g0078 478 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Dere07g0078 478 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Dere07g0078 478 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Dere07g0078 478 MobiDBLite consensus disorder prediction 442 463 - -
Dere07g0078 478 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Dere07g0078 478 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0078 Dere-ChrDere07 2158056 2163994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0078 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 2.46e-29 115