LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere07g0065	ATGCGAGATATGGGCATGCTGGAGCTGTTCAAGTGGACGGTGTTTGCTTTAGCTTTTCTTCTAAGCATGGGTAATGAATCATTTTCCTCATTCATTCCTGTTGATAATTACTTGTTCGCTTGTGGTTCTGCTGTTAATATAGACTCTCAGGGTAGGACTTTTTTTCCTGAATCTGTCTATGAGAAGGACAAATTAGAATTGAGAAGCCAGAAATCTGTTGTTGTAAATTCTTCTTCTGGGGCTCCATTTCCAGTCTACGAGTCAGCTAAAGTCTTTTGGAGCAATGCTTCATATAGATTCAAAATTGGGCAAGAAGGCCGACACTGGATACGCCTTTACTTTTACCCTGTGCCCAACTTCAACCAAAACTTGTATACTGCCTCAATAACAGTAGCCACAGATAATCTTGTACTTCTCAGTAATTTCACTTTCATGAACTCTAAGTCCCCCTCGCGATCTCCAGGACCTTTCAGAATTGGCCCTGAAACTGTTTACCGGTTGAATGTGGGCAGTGGATCTCTCGACACTCGGCATGATAACCTTGGTAGGAACTGGGAGGATGATGAAAAATATCTCTCCTCTGATAGTAGTGCTCTGGATATTCCAGTTGATGATTTAACTATTAAGCATCCTTCTGCCGCTACACCTGAGACAGCACCATTGTGGGTTTATTCTACAGCCAAAGCCATGGCAGATGCACGGAAATCCAATTTAAGTTGGGTTTTCTCTATAACTCCAAACATCAGCTACGTTATTCGGGAGCATTTCTGTGATATCATAAGCAAGTCACTCAATAGTTTGGTTTTCAATTTATACATAAATGGTCTTCTTGTTTTTGAAACTCTTGACCTTTCCGAACAAGCTGGCTTGCTTATGCCATATTATATGGACTCCACCATCTTTGACTTGGAGAACACTTTGACAGTGAGTGTTGGTCCGTGTAGCACGGCAGATAAAAAAAATGCAACCATGAACGGGCTAGAGATAATTAAGATCAGCAAGGGGATAATAATTGATGGGTTTTCTGCTCTGGATAGGGATCATAGTATTCTTACTAGCTCATCCCATAGAAGTGTGAAATCAGCAATTACAGTTGTCTCTAGTGTCGTTGCTGCAGTTATCCTAGTCCTCGTTGGAATAACTTTGTGTTACTTAACTACTTACAAGTCAAAGGCAAGCTCGGGTGCTATTCCCAAACCTTGCAGACATTTTACTTTCCAAGAAATCCATGAAGCAACGAACAACTTCGATAAGTGCCTGCTGCTTGGAGAAGGTGGTTTTGGCGAGGTCTATAACGGAACGATTGATAATGGGATAAAAGTAGCCATCAAAGTATCGAAATCCAAATCAAGATGGGGTCTTCATGAATTTCAAAATGAGATTGAATTACTATCCAAGCTCTCTCATCCCAACCTGGTCTCACTAATAGGCTATTGTAATGAAGGGTCACGAATGATTCTAGTATACGAATTCTTGGCAAATGGATCTTCAATTGGCCATCTCTATGGGACAAATTTTGTTCCTCTCTCATGGAAGCAACGACTGGGAATATGCATTGGGGCTGCAAAAGGTCTCCATTACCTTCATGCAGGAGCTCATCAAAGCATTATCCATCGCGATGTGAAGACAGCAAATATTATCTTGGATGAAAATTTTGTTCCAAAAGTTGCTGATTTTGGTATCTCAAGAAAAGGTCCTTCTCTGGACAAGAGCCATGTGACAACTGCTGTAAAGGGTAGCTTTGGTTGCCTTGATCCTGAGTATTTTAGAACGAAATTTCTTACTGAGAAATCAGATGTGTTCTCATTTGGGGTGGTTCTATTAGAAGTTATCTGCGGCAAGCCTGCTTTAGATGATGCTCCTCCAACAGAGTATATTAATTTGGCAAGATGGGCGTTAAGCTGCCAAGAAAAGGACACATTTCATCATATTGTAGACCCAAACTTGATTGGGAAAGGTAATTCAGATTCTCTGAACAAGGTCTGTGAGTTGGCCGGGAAGTGCTTAGTGGAGAGTCGCATAAACAGACCACCAATGGGGTATGTACTGTGTGAGCTAGCAGACGCTCTCCACCTTGAGTTGGCTTCACCAATTTGGCAAGTTTCTGTGGACACCGTCGTTGATGTGGATGCAGAAAATGGAATCAAGGATGAAAAGGGGTAA	2163	0.4166	MRDMGMLELFKWTVFALAFLLSMGNESFSSFIPVDNYLFACGSAVNIDSQGRTFFPESVYEKDKLELRSQKSVVVNSSSGAPFPVYESAKVFWSNASYRFKIGQEGRHWIRLYFYPVPNFNQNLYTASITVATDNLVLLSNFTFMNSKSPSRSPGPFRIGPETVYRLNVGSGSLDTRHDNLGRNWEDDEKYLSSDSSALDIPVDDLTIKHPSAATPETAPLWVYSTAKAMADARKSNLSWVFSITPNISYVIREHFCDIISKSLNSLVFNLYINGLLVFETLDLSEQAGLLMPYYMDSTIFDLENTLTVSVGPCSTADKKNATMNGLEIIKISKGIIIDGFSALDRDHSILTSSSHRSVKSAITVVSSVVAAVILVLVGITLCYLTTYKSKASSGAIPKPCRHFTFQEIHEATNNFDKCLLLGEGGFGEVYNGTIDNGIKVAIKVSKSKSRWGLHEFQNEIELLSKLSHPNLVSLIGYCNEGSRMILVYEFLANGSSIGHLYGTNFVPLSWKQRLGICIGAAKGLHYLHAGAHQSIIHRDVKTANIILDENFVPKVADFGISRKGPSLDKSHVTTAVKGSFGCLDPEYFRTKFLTEKSDVFSFGVVLLEVICGKPALDDAPPTEYINLARWALSCQEKDTFHHIVDPNLIGKGNSDSLNKVCELAGKCLVESRINRPPMGYVLCELADALHLELASPIWQVSVDTVVDVDAENGIKDEKG	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere07g0065	720	Gene3D	-	36	151	-	-
	Dere07g0065	720	Gene3D	-	159	334	-	-
	Dere07g0065	720	PANTHER	OS07G0166700 PROTEIN	401	692	IPR045272	GO:0004714\|GO:0006468
	Dere07g0065	720	Pfam	Protein tyrosine and serine/threonine kinase	422	629	IPR001245	GO:0004672\|GO:0006468
	Dere07g0065	720	Gene3D	Transferase(Phosphotransferase) domain 1	494	696	-	-
	Dere07g0065	720	FunFam	receptor-like protein kinase FERONIA	383	491	-	-
	Dere07g0065	720	SUPERFAMILY	Protein kinase-like (PK-like)	392	685	IPR011009	-
	Dere07g0065	720	Gene3D	Phosphorylase Kinase; domain 1	379	491	-	-
	Dere07g0065	720	Pfam	Malectin-like domain	163	331	IPR024788	-
	Dere07g0065	720	ProSiteProfiles	Protein kinase domain profile.	416	694	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere07g0065	720	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	536	548	IPR008271	GO:0004672\|GO:0006468
	Dere07g0065	720	ProSitePatterns	Protein kinases ATP-binding region signature.	422	444	IPR017441	GO:0005524
	Dere07g0065	720	SMART	serkin_6	416	694	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere07g0065	Dere-ChrDere07	1874313	1877257	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere07g0065	22	695	Receptor kinase-like Gene Family	AT2G21480	38.903	6.05e-166	498

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Dere07g0065		PK_Tyr_Ser-Thr	2.5e-42	CL0016