Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere07g0021 ATGAGCAAAGCCGGGGACGAAGAAGAGGAAGACGAGTGCTTCTACGAGTCCCACGACCGCTTAGTTTCGTCATCTTGCTCTTGTTCAACTTCCAACTCCGACGACGACAACGACTCCAATTCCAACTCTCCCAATTATGGTTCGGACCAGCCCTTCCCTGTCCTCAAATTCCCAGTTGCCATGTCCAGGTACGACATATGGATCTCCGAACCCTCTTCGGTCTCTGAACGCCGGACCCGTCTCCTCCGCGAGATGGGTCTCGGCGGCGACCCATCACTGTCCCGGGGAAAGCCAGTCTCCACCGCTGATATCAGAGAACTGGTCAATGGAGAGTTTGGGCGATCGGCGTCGTCCGATCACTTGAGCCGCCAACAACAGGGTGAAAGTTCCAGTTGCTCCGCCGGCATATTCCGATCAAAATCAGACGGTGCAGCGGATCGCAGTGACTTGTCTGTGAGTGGTCAGTCTCGTGATCGTTGTAATAAGTCTTCTTCTTTTTATTCGTCTTCTTCAATTCTTTCTATTCATTCGGTCGCTCCAGAGACCGGCTCATTTGTAAATAATCGTAATCACGTCGTTAAGTCAAGGGGCGGTAATGGCAATGGATCACCAATTGCTAGTGCCGCTTCCCCCAATAAGCCGCCTTCGGGGAAAAATTGTAAAAGAGTGGATGAAATTCAAAGCGAATCCTCGAACTTGAGTGTGGATTTCGGTCATAGTTTGGTGGTGCCCGTTTCAGAGATTGCAGGTGGAGAGGTAGAGGAGGTTGTGGACTTTAATGGGGTTGACAGGGTAAATGAACAAGTGTGCACCATAAGAGATCTCGATAATGGGAAGGAGTTTGTGGTCAAGGAGATTAGGGAAGACGGAATGTGGAATAAACTCAAGGAAGTGGGGACTGGACGGCAGTTGACTATGGAGGAATTTGAGATGACAGTTGGGCACTCACCAATTGTTCAAGAATTAATGAGACGGCAAAATGTTGAGGAGGGTAATAAGGATAATGTCGATTCTAATGCAAGTGGTGGTAGTGGAGGTGGTTCCAAGCAGAAGAAGAAAGTGGGTTGGTTTAAGAGTATAAAGAGTGTTGCAAGCACCATGACGGGTTACAAGGAGAGACGAAGTAGCGATGAAAGAGATACCTCATCTGAGAAGGGTGGGCGCAGGTCTAGCTCTGCAACGGATGATAGTCAGGATGGTTCATTTCATGGGCCTGAGAGAGTAAGGGTCAGGCAGTATGGGAAGTCTTGCAAAGAGCTTACAGGACTTTATAAAAGCCAGGAGATACAGGCTCATAATGGATCTATATGGAGCATTAAGTTTAGTTTGGATGGGAAATATCTTGCTAGTGCAGGTGAGGATTGTGTAATACATGTTTGGCAAGTTGTGGAGTCCGAGAGGAAGGGGGAGCTGCTGATGGAGAAACCAGAAGATGGGAACGTGAACATGTTGTTTGTTGTGAATGGGTCGCCAGAGCCAACTCTGTTGCCCCCTGGAATGGACAATCATTCAGACAAGAAGAGAAGGGGGAGGTCATCCATAAGCAGAAAATCATTGAGCTTGGACCAATTAATGGTGCCTGAAACTATTTTTGCACTCACAGAAAAACCCATCTGCTCATTCCAAGGCCATCTTCATGATGTGCTTGACCTATCTTGGTCCAAGTCTCAGCATTTGCTCTCATCTTCTATGGACAAAACAGTGCGGCTGTGGCACTTGACTAGCAAGTCTTGTTTGAAAGTTTTTTCACACGGTGACTTTGTAACCTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCATTGGATTCTAAGGTTCGCATATGGAGCATTCCTGATCGTCAAGTTGTTGATTATACTGATCTGCATGAAATGGTCACTGCAGCATGCTATACATCTGATGGGCAGGGTGCATTAGTTGGTTCATACAAGGGTAGCTGCCATTTATATGATACAACTGATAATAAGTTGCAACAGAAGAGTCAGATTAATCTGCAGAACAAGAAAAAGAAATCACATCACAAGAAAATTACTGGCTTCCAGTTTGCCCCAGGAAGTTCTTCAGAAGTACTCATCACATCTGCCGATTCAAGAATTCGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTCAAAGGATTTCGTAACTCAAATAGCCAGATTTCAGCCACCCTCACAACAAATGGTAAATATATAGTCTCGGCAAGTGAGGATTCCCATGTGTATATATGGAAAAATGAAGCTGATTGTAGACCTAACCGGAGCAAAGGTGTCACTGTAACGCAATCTTATGAACATTTTCACTGTAAAGATGTGTCAGTGGCCATTCCCTGGCCTGGTATGGGCGATGCGTGGGAAATGCCTGATACTTTTTCTGGAGAACAAACTGGGGATGATAATAACCTGGATGAGGTCATGTCTGTCAATCATCCTCCTACACCAGTGGAGGAAAATTTCGGTACTGATGGTTCGCAATCAGCATCTGGGTGCAACAATAGTCCTCTTCATGGAACAATTGCCAGCGCAACGAACGATTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAGCTGGTTGTAGCTGCAAGGAACCGAACCCCTCGTGTCAGTATAGATCTCTCCAATGGGGTAAGCCAAAATATGTCAGCCTGGGGTATGGTGATTGTGACTGCCGGCCTTCGAGGGGAAATCAGAACTTTCCAAAATTTTGGATTGCCACTTCGGATATAA 2748 0.46 MSKAGDEEEEDECFYESHDRLVSSSCSCSTSNSDDDNDSNSNSPNYGSDQPFPVLKFPVAMSRYDIWISEPSSVSERRTRLLREMGLGGDPSLSRGKPVSTADIRELVNGEFGRSASSDHLSRQQQGESSSCSAGIFRSKSDGAADRSDLSVSGQSRDRCNKSSSFYSSSSILSIHSVAPETGSFVNNRNHVVKSRGGNGNGSPIASAASPNKPPSGKNCKRVDEIQSESSNLSVDFGHSLVVPVSEIAGGEVEEVVDFNGVDRVNEQVCTIRDLDNGKEFVVKEIREDGMWNKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEEGNKDNVDSNASGGSGGGSKQKKKVGWFKSIKSVASTMTGYKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTGLYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLMEKPEDGNVNMLFVVNGSPEPTLLPPGMDNHSDKKRRGRSSISRKSLSLDQLMVPETIFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLTSKSCLKVFSHGDFVTCIQFNPVDDRYFISGSLDSKVRIWSIPDRQVVDYTDLHEMVTAACYTSDGQGALVGSYKGSCHLYDTTDNKLQQKSQINLQNKKKKSHHKKITGFQFAPGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNSNSQISATLTTNGKYIVSASEDSHVYIWKNEADCRPNRSKGVTVTQSYEHFHCKDVSVAIPWPGMGDAWEMPDTFSGEQTGDDNNLDEVMSVNHPPTPVEENFGTDGSQSASGCNNSPLHGTIASATNDYFFDRISATWPEEKLVVAARNRTPRVSIDLSNGVSQNMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere07g0021 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 429 470 IPR001680 GO:0005515
Dere07g0021 915 SUPERFAMILY WD40 repeat-like 423 750 IPR036322 GO:0005515
Dere07g0021 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 429 462 - -
Dere07g0021 915 PANTHER WD REPEAT DOMAIN 44 6 912 IPR040324 -
Dere07g0021 915 MobiDBLite consensus disorder prediction 146 162 - -
Dere07g0021 915 Gene3D - 387 483 IPR015943 GO:0005515
Dere07g0021 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 581 IPR001680 GO:0005515
Dere07g0021 915 SMART WD40_4 534 572 IPR001680 GO:0005515
Dere07g0021 915 SMART WD40_4 616 655 IPR001680 GO:0005515
Dere07g0021 915 SMART WD40_4 708 749 IPR001680 GO:0005515
Dere07g0021 915 SMART WD40_4 662 707 IPR001680 GO:0005515
Dere07g0021 915 SMART WD40_4 422 461 IPR001680 GO:0005515
Dere07g0021 915 SMART WD40_4 575 614 IPR001680 GO:0005515
Dere07g0021 915 FunFam Transducin/WD40 repeat-like superfamily protein 387 490 - -
Dere07g0021 915 MobiDBLite consensus disorder prediction 190 214 - -
Dere07g0021 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 575 - -
Dere07g0021 915 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 581 615 - -
Dere07g0021 915 MobiDBLite consensus disorder prediction 492 515 - -
Dere07g0021 915 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 623 IPR001680 GO:0005515
Dere07g0021 915 MobiDBLite consensus disorder prediction 115 137 - -
Dere07g0021 915 Pfam WD domain, G-beta repeat 536 571 IPR001680 GO:0005515
Dere07g0021 915 Pfam WD domain, G-beta repeat 428 460 IPR001680 GO:0005515
Dere07g0021 915 Pfam WD domain, G-beta repeat 712 749 IPR001680 GO:0005515
Dere07g0021 915 Pfam WD domain, G-beta repeat 577 614 IPR001680 GO:0005515
Dere07g0021 915 MobiDBLite consensus disorder prediction 1 52 - -
Dere07g0021 915 MobiDBLite consensus disorder prediction 371 392 - -
Dere07g0021 915 MobiDBLite consensus disorder prediction 330 353 - -
Dere07g0021 915 Gene3D - 518 774 IPR015943 GO:0005515
Dere07g0021 915 MobiDBLite consensus disorder prediction 190 221 - -
Dere07g0021 915 MobiDBLite consensus disorder prediction 367 410 - -
Dere07g0021 915 MobiDBLite consensus disorder prediction 73 162 - -
Dere07g0021 915 MobiDBLite consensus disorder prediction 20 49 - -
Dere07g0021 915 FunFam WD repeat-containing protein 44 522 788 - -
Dere07g0021 915 PRINTS G protein beta WD-40 repeat signature 448 462 IPR020472 -
Dere07g0021 915 PRINTS G protein beta WD-40 repeat signature 601 615 IPR020472 -
Dere07g0021 915 PRINTS G protein beta WD-40 repeat signature 559 573 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere07g0021 Dere-ChrDere07 537905 545068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere07g0021 528 746 U-box Gene Family AT1G04510 26.778 9.54e-06 47.4