Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2163 ATGTCAAGGTCGACACCGGAGAAGATCGGGGCAGGACGTGTGTTAGCAGTGGCAATTGAGAATAACAAGACTAGCCAGCACGCTGCCAAATGGGCTGTTGACAATCTTCTTCCCAAAAACCACAATCTCTTGCTAATCCATGTTAGACAAAGAGCCTCTTCCACATCCACACCAACCATCAACTTCACCGACGGTGGTGCTCATGCATACAACCAGCAAATCGACAACGAATCGAAGGAGCTCTTCGCTTCATTTCGTGTTTTCTGCAATAGAAAGAGTATACAATGCAAAGAAGTGTTACTGGACGACATGGATATAGCTAAAGCATTAATTGAAAGTGTTTCCACGTATTCTATTGAGCATTTGGTTATTGGGGCGCCATCAAGAAATGGCCTTGTCAGGACCGTAGATGTTCCGAGCTTTGTGTCAAAAGGGGCGCCGCCATTCTGCACAGTGTACATTATATCCAAAGGAAAAATCTCAACTGTACGATCTGCTACTGCTCCACCTCCACCTCATAATCGAATGCATGCACATGCCCAACGCAACCAACCACCAACAGCCGCAGAGAGGCTATCTTATGGTAGTGAGAATGGGTCCCGGCAGCAACCCGACAAAGAGGACTTCAGATCACCGTTCACAAGGGGTGGTAATGGCAGATCAATCTTGAAATCATACGAGTCCTCAATCCCCGATTCTGATATATCGTTCGTGGGCAGCGGAAGGCCAACCATTGATCAAATGTTTCCCTCCTTGTATGATGATCTGGGACCTGGAATGCCCCCTTCCCTTTCAAGCGCCTCAGATTTTGATGCCACAAGCTTTGTGTCATCTTCCTCAGCACGCAAATCAATTGACTCTTCTCTCGCTGACTTCTCATTCAGCTCCCAAGAAAGTGATAAGTCATCCTCAAGACTCCCCATGAACACAGATGATGTGGAAGCCGAGATGAGGAGACTGAAGTTAGAACTCAAGCAGACAATGGAAATGTACAGTACAGCTTGCAAGGAAGCTCTCACGGCTAAGCAGAAGGCTATGGAACTTCAATGTTGGAAATTGGATGAGCAAAAGAACGTACAAGTGGCAAGAATAGGTGATGAATCAGCGTTGTCACTTGCAGAGAAGGAGAAACCAAAGAGTAAAGCTGCCCTGAATACAGCAGAAGCATCCAAAAAAATTGCAGAACAGGAAGCACAAAAAACAATAAATGCAGAGATGAAATCCCTGACAGAAGTTGAGGACAGAAAAAAGACACAAGATACTTTTTCACAAGGTAGCGTCGGGTACAGAAGATACACTATTGAGGAAATAGAAGCCGCAACACAAGGCCTTTCAAACTCTCTCAAGATCGGCGAAGGAGGTTATGGGCCAGTATACAGATGCGAATTAGATCACACACCGGTTGCAGTAAAAGTTTTGAAGCCAGATGCAGCTCAAGGACGATCACAGTTCAAGCAGGAGGTTGAAGTGTTGAGCTGCATACGGCATCCAAACATGGTTCTGCTGCTAGGAGCTTGCCCAGAGTATGGATGCTTAGTGTACGAGTACATGGCGAATGGAAGCTTGGATGACCGCCTCTTCCGGAAAGGTAACACGCCGGTTCTCCCGTGGCAGCTAAGATTCAGAATAGCTGCAGAGATAGGCACAGGACTACTTTTTCTTCATCAAGCAAAACCAGAACCCATTGTTCATCGTGATTTGAAGCCTGGCAACATATTGCTGGACCGTAACTTTGTGAGCAAGATTAGCGACGTGGGATTGGCCAGGATCGTGCCTCCTTCGGTTGCAGACAGTGTAACTCAGTATCGCATGACATCGACTGCTGGAACATTCTGTTACATTGACCCCGAGTACCAACAAACGGGAATGCTTGGAATTAAATCTGATATTTACTCATTCGGCATCATGCTTCTGCAACTGATAACAGCCAAGCCACCGATGGGATTGACTCATCATGTTGCGCGAGCTATTGAGAAGGGCACTTTCCCTGAAATGCTCGACCCAGCTGTTGAGGACTGGCCGGTTGAGGAGGCCCTGCAATTTGCAAACCTTGCTCTGCAATGTGCAGAAATGAGAAGAAAAGATAGGCCCGATCTGGGCAAAGTAGTGTTACCTCTGCTCAATAAACTCAGAGCATTTGCTGAAGACACCATGATGCCTTCCAATATGTTCGGACTCAATACGGGTTTCACTTCCAGAAGCGGTTCCAATTCCACGCTTCAATTGAGTCGCTGA 2235 0.4671 MSRSTPEKIGAGRVLAVAIENNKTSQHAAKWAVDNLLPKNHNLLLIHVRQRASSTSTPTINFTDGGAHAYNQQIDNESKELFASFRVFCNRKSIQCKEVLLDDMDIAKALIESVSTYSIEHLVIGAPSRNGLVRTVDVPSFVSKGAPPFCTVYIISKGKISTVRSATAPPPPHNRMHAHAQRNQPPTAAERLSYGSENGSRQQPDKEDFRSPFTRGGNGRSILKSYESSIPDSDISFVGSGRPTIDQMFPSLYDDLGPGMPPSLSSASDFDATSFVSSSSARKSIDSSLADFSFSSQESDKSSSRLPMNTDDVEAEMRRLKLELKQTMEMYSTACKEALTAKQKAMELQCWKLDEQKNVQVARIGDESALSLAEKEKPKSKAALNTAEASKKIAEQEAQKTINAEMKSLTEVEDRKKTQDTFSQGSVGYRRYTIEEIEAATQGLSNSLKIGEGGYGPVYRCELDHTPVAVKVLKPDAAQGRSQFKQEVEVLSCIRHPNMVLLLGACPEYGCLVYEYMANGSLDDRLFRKGNTPVLPWQLRFRIAAEIGTGLLFLHQAKPEPIVHRDLKPGNILLDRNFVSKISDVGLARIVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSFGIMLLQLITAKPPMGLTHHVARAIEKGTFPEMLDPAVEDWPVEEALQFANLALQCAEMRRKDRPDLGKVVLPLLNKLRAFAEDTMMPSNMFGLNTGFTSRSGSNSTLQLSR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2163 744 Gene3D Phosphorylase Kinase; domain 1 411 516 - -
Dere06g2163 744 SMART serkin_6 444 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2163 744 Pfam Protein kinase domain 448 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2163 744 PANTHER OS02G0152300 PROTEIN 15 731 - -
Dere06g2163 744 Coils Coil 384 404 - -
Dere06g2163 744 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 416 516 - -
Dere06g2163 744 Coils Coil 310 330 - -
Dere06g2163 744 FunFam U-box domain-containing protein 51 517 717 - -
Dere06g2163 744 Gene3D HUPs 13 152 IPR014729 -
Dere06g2163 744 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 135 - -
Dere06g2163 744 ProSiteProfiles Protein kinase domain profile. 444 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2163 744 Gene3D Transferase(Phosphotransferase) domain 1 517 720 - -
Dere06g2163 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Dere06g2163 744 CDD STK_N 16 158 - -
Dere06g2163 744 MobiDBLite consensus disorder prediction 186 200 - -
Dere06g2163 744 MobiDBLite consensus disorder prediction 163 225 - -
Dere06g2163 744 Pfam Universal stress protein family 15 134 IPR006016 -
Dere06g2163 744 SUPERFAMILY Protein kinase-like (PK-like) 422 703 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2163 Dere-ChrDere06 37273479 37276527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2163 7 729 Receptor kinase-like Gene Family AT1G78940 54.704 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dere06g2163 Pkinase 1.9e-39 CL0016