Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2158 ATGGAATCCCTCAATTACTCAATTGCTACAATGTGGGAGGCTCTTAGAATTGTCAATTCCAAGGTCTGCTTGTGGAAGCTTCTGTGGGGGAACCGACTGAACACTCATTCTTTGAATGTTGCTTCCTTAGCAAGGTTCTTTGGAGTTGAAGAGCCAATGGGAGTTCTAAGAAAAACAGCTTCTCAGCTTCAGGCCCTTGATAATTTCTATACAGAGGAGAAGTACCCAACGCAGATAGCAATGGAAGACTATGCATCTACTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTGAGAAAAGGAGGAGGGAGAAGAGAGAAAATGGAGTGTTAGTATCATCATGTTCTTCTTCCGGTAAGAAACTCTCGATTCATAGTGGAAAAGATGTCCTGGGTGTTGCTGTTGATAGAAGGATACACAAAAGAGATCTGTCAAATCAGAAAGGTGATTCTACGTCACCATCAAGATACAATGCAGCTGTAACTAGAAATGCTAGGAAAAAGAAAAAGCACAGACGTCTTCAGGATTTTTTTTCAGCAGACTACATTTTACAGAAGGTTTTCCGGAAGGATGGTCCTCCTCTTGGTGAAGAATTTGATTATCTTCCTTCAGGTCTCAAAAATTCTACCCCTGCTAGTCAAGAGGACCAAGGACCAATGAAAAGGAGGAAGGTTTCCAAGAGTGCAATTGAAAGTTGCCTGGATTCTAATAAGAAAGCACCAGTGAGAAAACATGGTATTGGCAAAGGTCTAATGACTGTATGGAGGGCAACAAATCCTGATGCTGGGGATGTTCCTATTGGCTTTGGCTTCAGCGATGGAGAAGTTTCTCTAATGCCAAAATCTATACTGCAGAAACCAGAGTGTGGGAACAAGAAGCCACGGAAAACACTAATCATGGCTGGACGTTCAAAAAATAAATTACAGAATGCAAGAAATAAATTAAGAGAAAAGAGGAAGCTTTTTATGCAAAGAAGCTTGGTGAAATCTAACCGAGATGTGAGTCAGAAGCAATCACAGAAGGAAAAATGTGAACTTGTTTTGGATAGAACAATACCTGAGGAAGAACTTCATCGAATATCAATGTTAATGGATGATGAAGAGCTAGAGATGAGAGAGTTACAAGCAGGACCTGATTTGCTTGTGTGTTCTGATCATCTTGCTGCCAGTGGAATTCTTGGCTGCTCACTTTGTAAAGATGTGCTGTCTAAGTTCCCCCCTGACGCTGTTAAGATGAAGAAACCCATCTGTTTGCAACCTTGGGACTCCTCTCCAGAAATTGTCAAGAAACTTTTTAAGGTATTCCATTTTCTATATACATATGCTACTGTTCTTGATATATGCCCCTTCACTCTTGATGAGTTTGCTCAAGCCTTTCATGATAAGGACTCAATGCTACTTGGTAAAATTCATGTGGCCCTTCTCACTCTTCTTCTAGCTGACATCGAAGTGGAGCTTACTGGTGGATTTTTGCCTCATTTAAATAAGTCATGCAATTTTCTTGCATTGCTTCACTCGGTTGAGAATCAAGAATATTCTCTGGACTTATGGAAAAGATCTCTTAATCCTCTTACCTGGGTAGAAATACTCCGGCAAGTTTTGGTTGCTGCTGGCTTTGGTTCAAAGGAAGGTGCTTTGCGGAGAGAAGCGCTTAGCAAGGAACTGAATCTCCTAGTAAACTATGGCCTACGTGCTGGCACCATGAAGGGCGAGTTGTTCAAAATCTTGTTAGAGCAAGGAAACAATGGGTCAAAAGTATCTGAGCTGGCAAAGTCAATGCAGATTGTTGAATTGAACCTTGCCAGCACAACAGAGGAGCTGGAGTCCTTAATTTGTTCTACACTGTCAAGTGATATTACTTTATTTGAAAAGATTTCATCAACTGCATATCGGCTGCGTATGAGCTCTTTTAAGAAGGACATTGATGAATTTCAGTCAGATACAGAGGACTCTGGAAGCATTGATGATGAACATGATGATGGTAATACATGTAGCAGTGGTGACGATTTTGAATGTGGTTCAGGGAACTCCAATTTAAGAAAATTGAAGCGTGCAAGCAATTCTAGAATTAAAAATAATATGCTCACTGCATCCACTGAAATTGATGAGAGCCATCCAGGAGAAGTATGGCTTTTAGGATTGATGGAGAGTGAATATTCAGATTTGAGCATTGAAGAAATGTTGAATGCATTAGTGGCTTTGACTGATCTTATTTCTTCTGGATCCAGCATTAGGATGAAGGATCCAACAAAGATTACTGCTGATCACAATTCTAGCATCCAATTACGTGGTTCTGGAGCAAAAATAAAAAGGTCAATAGTAAAGAAGCCTGGGTCTTATTGGAACCAGATTGGACTAATGCATTATGTTAAAGAAGGGCACTCATCATTGAATCCTCATTCCTTTCCAGTGGATTCCTCACTATTTATCTCAAATATCTACAATCATGAGGAATCTTTTGAGAAGGGAAAAGAAGCAAAAGAAATAGGTTCAACTGACTCACACCCCATTCAATCAGTGTTTTTGGGATCTGATCGTAGGTACAATAGATACTGGCTTTTCTTAGGCCCTTGTAACGTGGATGACCCAGGCCACAGGAGAGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAAGTGATTGATACTGAAGAGGCTCTGTGTGCCTTGTTGTCAGTTTTGGATGCTAGAGGTAAACGGGAGGCACTTCTTATTGAACCTTTGGAGAAGCGGAAAGTGTCTCTTTGCAGAGCCATGTCCAGGAATATGGTTAATTGTACTGGAATCTGTCGTATGTCACATTCTGATCAATCTGAGCTTGATAGGATCACTGAGGATAGTTATTCTCCAGTATCTGATGTAGACAATCTGAGCCTGACTGAAACTACAGGAAACTCTCTACCTTCAGCTGGAGCAGTGGTAATTGAAGCTGGAAAGAAGGGAGCAGAACAAGTACAAAAATGGATCCGTCTGCAAGCATATGATTCATGGATTTGGAATTCCTTTTATTTAAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTTGCCCGATGTGAGAGTTGTCATGATCTATATTGGAGAGATGAGAGACATTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTTGAAGAAAAATATGCAATCCACACAGCCACATGCAGGGAGAAAGATGACAGTAACACATTTCCAAATCACAAAATCTTATCATCACAGATCCAGTCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGTAGATGCTCTGGTGGGTGCTTGGAGGAAGTCTGCTCATAAGCTTTGGGTCAGACGGCTCAGACGCACCTCAACTATAGTTGAGCTTTTGCAGGTTGTTGCTGATTTCGTTGGTGCCATCAATGAGGATTGGTTGTTTCAATGCAATTTCCCTGATGGTGTGGTTGATAAAATCATTGCAACTTTTGCATTTATGCCCCATACTTCGTCAGCTCTTGCTTTATGGTTAGTGAAGTTGGATGCCATAATTGCTCCCTATCTGGACAAAGTTTAG 3564 0.4054 MESLNYSIATMWEALRIVNSKVCLWKLLWGNRLNTHSLNVASLARFFGVEEPMGVLRKTASQLQALDNFYTEEKYPTQIAMEDYASTLGLTYKQVQDWFVEKRRREKRENGVLVSSCSSSGKKLSIHSGKDVLGVAVDRRIHKRDLSNQKGDSTSPSRYNAAVTRNARKKKKHRRLQDFFSADYILQKVFRKDGPPLGEEFDYLPSGLKNSTPASQEDQGPMKRRKVSKSAIESCLDSNKKAPVRKHGIGKGLMTVWRATNPDAGDVPIGFGFSDGEVSLMPKSILQKPECGNKKPRKTLIMAGRSKNKLQNARNKLREKRKLFMQRSLVKSNRDVSQKQSQKEKCELVLDRTIPEEELHRISMLMDDEELEMRELQAGPDLLVCSDHLAASGILGCSLCKDVLSKFPPDAVKMKKPICLQPWDSSPEIVKKLFKVFHFLYTYATVLDICPFTLDEFAQAFHDKDSMLLGKIHVALLTLLLADIEVELTGGFLPHLNKSCNFLALLHSVENQEYSLDLWKRSLNPLTWVEILRQVLVAAGFGSKEGALRREALSKELNLLVNYGLRAGTMKGELFKILLEQGNNGSKVSELAKSMQIVELNLASTTEELESLICSTLSSDITLFEKISSTAYRLRMSSFKKDIDEFQSDTEDSGSIDDEHDDGNTCSSGDDFECGSGNSNLRKLKRASNSRIKNNMLTASTEIDESHPGEVWLLGLMESEYSDLSIEEMLNALVALTDLISSGSSIRMKDPTKITADHNSSIQLRGSGAKIKRSIVKKPGSYWNQIGLMHYVKEGHSSLNPHSFPVDSSLFISNIYNHEESFEKGKEAKEIGSTDSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDARGKREALLIEPLEKRKVSLCRAMSRNMVNCTGICRMSHSDQSELDRITEDSYSPVSDVDNLSLTETTGNSLPSAGAVVIEAGKKGAEQVQKWIRLQAYDSWIWNSFYLNLNVVKYGRRSYIDSLARCESCHDLYWRDERHCKICHMTFELDFDLEEKYAIHTATCREKDDSNTFPNHKILSSQIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTIVELLQVVADFVGAINEDWLFQCNFPDGVVDKIIATFAFMPHTSSALALWLVKLDAIIAPYLDKV 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2158 1187 SMART testlast3 427 486 IPR018501 -
Dere06g2158 1187 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 840 914 IPR028941 -
Dere06g2158 1187 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 708 747 IPR028942 -
Dere06g2158 1187 Gene3D - 54 114 - -
Dere06g2158 1187 ProSiteProfiles 'Homeobox' domain profile. 59 109 IPR001356 GO:0003677
Dere06g2158 1187 MobiDBLite consensus disorder prediction 143 172 - -
Dere06g2158 1187 Pfam Homeodomain 59 108 IPR001356 GO:0003677
Dere06g2158 1187 MobiDBLite consensus disorder prediction 648 672 - -
Dere06g2158 1187 ProSiteProfiles DDT domain profile. 427 486 IPR018501 -
Dere06g2158 1187 Pfam DDT domain 430 483 IPR018501 -
Dere06g2158 1187 MobiDBLite consensus disorder prediction 203 243 - -
Dere06g2158 1187 PANTHER HOMEOBOX PROTEIN SIX 320 1179 - -
Dere06g2158 1187 SMART HOX_1 51 113 IPR001356 GO:0003677
Dere06g2158 1187 Coils Coil 303 327 - -
Dere06g2158 1187 CDD homeodomain 57 110 IPR001356 GO:0003677
Dere06g2158 1187 SUPERFAMILY Homeodomain-like 56 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2158 Dere-ChrDere06 37204599 37217701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2158 58 207 Homeobox Transcription Factor Family AT1G28420 28.994 2.22e-07 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Dere06g2158 WSD 3.5e-13 No_clan