Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2123 ATGGTTGTGGCACATTTCCACCCAACACAATCATACGCTATGATGCTTGGAGAGTCCCATCACGCTAATCCCACCGTCCACGTGCCCCCCTGGCCTCTCCAGCTCGATGATTCATCCTCCGAGGTGTATTCCTCTTATCCGGTGAGTGGTGTTTCCGTCAATTTCGACGGCAATGCCAGCGCCGGCGATTACTCCCCCTATTACTTGCAAGAGGCTGTGACGGCGCTGCAGCGTTATCTCCCGTCCAACGATGCAGACATGGACTCCGACTCCGAGGTTCTGGGTCGGGAGTCTGATGCTCCGGTGGATGCCTATTCCTGTGATCATTTCCGCATGTACGAGTTCAAGGTGAGGAGGTGCGCGCGTGGACGGTCGCATGACTGGACCGAATGCCCTTATGCTCATCCCGGCGAGAAGGCTCGCCGGAGAGACCCCAGGAAGTATCACTATTCCGGCACTGCATGCCCGGAATTTCGCAAAGGGAACTGCAAGAAGGGGGATGCGTGTGAGTTCGCTCATGGAGTGTTCGAGTGTTGGCTTCATCCAGCTCGTTATCGCACGCAGCCGTGCAAGGACGGGAGGGGCTGCCGGAGAAGGGTGTGCTTCTTTGCTCACACGCCGGAGCAACTCAGGGTTCTGCCTCAGCAGAGTCCGAGGAGTGGCAACTCGGCCGATTCATACGATGGCTCTCCTTTGAGGCAGGCGATGGAGTCCTCTTGTGCTAAAACGCTGCCGTTCATTTCCTCTCCAGGGTCGATTTCTCCACCTGCTACGCCTCCGGCGGAGTCTCCTCCTGTGTCTCCGATGGCTCAGTCTCTGAGCCGGTCTCTAGGTTCGAGCTCCATCAATGAGATGGTGGCTTCGCTGCGTAATCTGCAGCTGGGTCAGGGGAAGTCGTTGTCCTCTCCTTGGAATGTTCCTATGGGGTCTCCCTGTTACGGGTCTCCCAGGGGATCCATGCTCCGACCCGGATTCTGCAGCCTCCCAACTACCCCTACGCAGGCGCCTACTCGTGCCGGCAAAACTAGCTATTTCGATATTTGGGAACAGAGTTACGAGGAGGAGCCAGTGATGGAGCGTGTGGAGTCTGGAAGGAACATCAGGGCAAAGATGTTTGAGAAATTGAGCAAAGAGAATTCTCTGGAGATATCGGGTCAGGCTGCTTCCGGTGGAGCTCCGGATGTCGGGTGGGTTTCGGAGCTGGTGAAGTTTTATTGA 1218 0.5657 MVVAHFHPTQSYAMMLGESHHANPTVHVPPWPLQLDDSSSEVYSSYPVSGVSVNFDGNASAGDYSPYYLQEAVTALQRYLPSNDADMDSDSEVLGRESDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGRGCRRRVCFFAHTPEQLRVLPQQSPRSGNSADSYDGSPLRQAMESSCAKTLPFISSPGSISPPATPPAESPPVSPMAQSLSRSLGSSSINEMVASLRNLQLGQGKSLSSPWNVPMGSPCYGSPRGSMLRPGFCSLPTTPTQAPTRAGKTSYFDIWEQSYEEEPVMERVESGRNIRAKMFEKLSKENSLEISGQAASGGAPDVGWVSELVKFY 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2123 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 174 IPR000571 GO:0046872
Dere06g2123 405 MobiDBLite consensus disorder prediction 252 266 - -
Dere06g2123 405 MobiDBLite consensus disorder prediction 212 232 - -
Dere06g2123 405 Gene3D - 150 213 - -
Dere06g2123 405 ProSiteProfiles Zinc finger C3H1-type profile. 150 176 IPR000571 GO:0046872
Dere06g2123 405 MobiDBLite consensus disorder prediction 251 277 - -
Dere06g2123 405 SMART c3hfinal6 149 175 IPR000571 GO:0046872
Dere06g2123 405 SMART c3hfinal6 184 207 IPR000571 GO:0046872
Dere06g2123 405 FunFam Zinc finger CCCH domain-containing protein 66 107 175 - -
Dere06g2123 405 PANTHER UNKEMPT FAMILY MEMBER 54 403 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2123 Dere-ChrDere06 36809854 36811235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2123 99 268 C2H2 Transcription Factor Family AT5G12850 55.882 8.92e-58 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Dere06g2123 zf-CCCH 7.6e-06 CL0537