Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2117 ATGAGCAATTTGAAGGGCTCTGATCTCATAGACGCGAAGCTGGAAGAGCATCAGCTGTGTGGATCCAAGCAGTGTCCTGGTTGTGGACACAAGTTTCAAGCCAAGCCGGACTGGCTGGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGACCAAGAACTTATAGAACACCTTGAAGCCAAAGTGGAGGCGAAGCACTTGAAATCACACCCTTTGATTGACGAGTTCATTCCAACCATCGAAGGAGAAGATGGGATTTGCTACACTCATCCCGAGAAACTTCCAGGAGTAACAAGAGATGGGTTGAGCAGGCATTTCTTCCACAGGCCGTCAAAGGCGTATACAACAGGAACAAGAAAGAGAAGAAAAATCCAAAACGAATGTGACTTGCAAGGAGGAGAAACCCGATGGCACAAGACTGGAAAAACAAGACCAGTAATGGTGAATGGTAAGCAAAAAGGGTGCAAGAAAATTCTGGTGCTTTACACCAACTTTGGCAAGAACAGAAAGCCCGAGAAGACCAATTGGGTGATGCACCAGTACCATTTGGGTCAGCACGAGGAAGAGAAAGAAGGCGAGCTTGTGGTCTCCAAGATATTCTTTCAGACACAGCCCAGACACTGCAACAATAATAATAATTGGTCTGAGAGAAGTGCAACGACTGGGGAAGCAAGTGGAGAACCTCACAGTAATAGCAGAAGAGAGAGTGGAAGTGGGAGTTGTTCTTCCAAGGAAATAGTTACTACTCACAGTCATAGGGATGACATGTCTACTGTGGGTGTTGGTGTGGGGGTTCCTCGATTAACGTCCTACGCTGCTTTGGATATTCACAATCAACACCTCAAATCCGACCATTTCAGCTTCATCCCCTTCAGAAAAAGCTTCGACGAGGTGGGAATAGGAAGAGAAGTAGTGCAGGCTTCAGGGTCAGGGTCATGTGAAGAAGGGCATCATCATCATCAACAACAGCAACATGCTGCAACTACAGCTTTCCATATCACTAGGCCTTCGCATCCCATCTCTACCATGATCTCTCCACCTCCTCCCCACCAGACATCCATCGTCCTCGACGATGTTTCCAGATTAATGCTCCAAAATGATCATTTCCAGCAACAACATCATAAACTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATTATGGGGTGCACTTCAACTAATACTAAAGAGGATTCATCTATGGCAAATCAACAAGAAGCAGAATGGTTGAAATACTCTTCATACTGGCCTGATCCTGGCAATCCAGGTCATCATGGATAG 1284 0.4626 MSNLKGSDLIDAKLEEHQLCGSKQCPGCGHKFQAKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKHLKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFFQTQPRHCNNNNNWSERSATTGEASGEPHSNSRRESGSGSCSSKEIVTTHSHRDDMSTVGVGVGVPRLTSYAALDIHNQHLKSDHFSFIPFRKSFDEVGIGREVVQASGSGSCEEGHHHHQQQQHAATTAFHITRPSHPISTMISPPPPHQTSIVLDDVSRLMLQNDHFQQQHHKLGGRSASGLEELIMGCTSTNTKEDSSMANQQEAEWLKYSSYWPDPGNPGHHG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2117 427 MobiDBLite consensus disorder prediction 207 246 - -
Dere06g2117 427 SUPERFAMILY NAC domain 35 202 IPR036093 GO:0003677|GO:0006355
Dere06g2117 427 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 8 389 IPR044799 GO:0003700
Dere06g2117 427 ProSiteProfiles NAC domain profile. 41 202 IPR003441 GO:0003677|GO:0006355
Dere06g2117 427 Pfam No apical meristem (NAM) protein 42 183 IPR003441 GO:0003677|GO:0006355
Dere06g2117 427 FunFam NAC domain-containing protein 73 50 206 - -
Dere06g2117 427 Gene3D NAC domain 50 206 IPR036093 GO:0003677|GO:0006355
Dere06g2117 427 MobiDBLite consensus disorder prediction 207 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2117 Dere-ChrDere06 36753534 36756225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2117 1 417 NAC Transcription Factor Family AT5G56620 51.549 3.14e-133 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere06g2117 NAM 2.9e-24 No_clan