Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2112 ATGGGAGGAACAAGAAGGGTTAAAACGGGGAAAGAGGGGAAGGAAGGTGGGAAAGAATATGAGGATGAGAAAGAAAATAGAGTGGGAGTCGTCCTAAAAAGAAGGAGGAAGGCGAGAATGGCAGTAAATGACGGCCATCTCCAAACTTGGCTATATTTAACCTCTTCCATCTCTCTCGACTCCTATACCATACCTTCCACCAAAGAACCACTTCATCCTCACTCAAGCCCATCGTTTTTTTTCTTTAACACAGAGATATACACAATGTCGTGGCAAAGTTACGTTGATGAGCATTTGATGTGCGACATCGACGGCCAAGGCCAGCATCTCGCCGCCGCTGCCATCATGGGCCTCGATGGCTCCGTCTGGGCTCAGAGCTCTTCCTTCCCTCAGTTCAAGCCCGACGAGATCGATGATATCAAGAAAGATTTTGAGGAACCAGGCCATCTTGCTCCTAAAGGCTTGCACGTTGCGGGCAACAAATACATGGTAATCCAGGGAGAGCCCGGAGCTGTCATCCGTGGGAAGAAGGGATCTGGGGGCATCACCATAAAGAAAACTGGACAAGCTCTGGTTTTCGGGATCTATGAGGAACCAGTGACTCCTGGACAGTGCAACATGGTTGTGGAGAGGTTGGGAGATTATCTCAGGAAAAGTAGAGGCAGAGCAAGCTACCAATTTCTGAGCAAACGGAAGCACAAAACTTGGGAGAAATCAAGCCCGAAGAAGAAGATGTCGTGGCAAACCTATGTCGATGATCACCTTATGTGCGAGATCGAAGGCAATCATCTCACTTCTGCGGCTATAATTGGCCAAGATGGCAGCGTTTGGGCTCAGAGCTCCAATTTCCCTCAGTTTAAGCCCGAGGAAATTACTGCTATCATGACCGACTTTGCTGAGCCTGGATCACTTGCTCCAACTGGATTATATCTTGGTGGCACAAAATATATGGTGATTCAAGGTGAATCAGGAGCTGTCATTCGAGGGAAGAAGGGTCCTGGCGGCGTTACTGTCAAGAAGACCAACCAGGCCTTGATAATTGGCATTTATGATGAACCAATGACTCCGGGTCAGTGCAACATGATAGTGGAAAGGCTTGGTGATTATCTCATTGATCAGGCTCTTTAA 1128 0.4796 MGGTRRVKTGKEGKEGGKEYEDEKENRVGVVLKRRRKARMAVNDGHLQTWLYLTSSISLDSYTIPSTKEPLHPHSSPSFFFFNTEIYTMSWQSYVDEHLMCDIDGQGQHLAAAAIMGLDGSVWAQSSSFPQFKPDEIDDIKKDFEEPGHLAPKGLHVAGNKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLRKSRGRASYQFLSKRKHKTWEKSSPKKKMSWQTYVDDHLMCEIEGNHLTSAAIIGQDGSVWAQSSNFPQFKPEEITAIMTDFAEPGSLAPTGLYLGGTKYMVIQGESGAVIRGKKGPGGVTVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIDQAL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2112 375 PRINTS Plant profilin signature 245 258 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Plant profilin signature 315 324 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Plant profilin signature 328 343 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Plant profilin signature 348 361 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Plant profilin signature 271 284 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Plant profilin signature 296 310 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Plant profilin signature 361 374 IPR005455 GO:0003779
Dere06g2112 375 CDD PROF 90 219 IPR005455 GO:0003779
Dere06g2112 375 FunFam Profilin 89 220 - -
Dere06g2112 375 MobiDBLite consensus disorder prediction 7 24 - -
Dere06g2112 375 CDD PROF 246 373 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Profilin signature 284 304 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Profilin signature 247 256 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Profilin signature 357 374 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Profilin signature 265 274 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Profilin signature 308 322 IPR005455 GO:0003779
Dere06g2112 375 PRINTS Profilin signature 344 357 IPR005455 GO:0003779
Dere06g2112 375 MobiDBLite consensus disorder prediction 1 24 - -
Dere06g2112 375 SUPERFAMILY Profilin (actin-binding protein) 246 373 IPR036140 -
Dere06g2112 375 Gene3D Dynein light chain 2a, cytoplasmic 243 374 - -
Dere06g2112 375 Gene3D Dynein light chain 2a, cytoplasmic 87 220 - -
Dere06g2112 375 SMART prof_2 89 225 IPR005455 GO:0003779
Dere06g2112 375 SMART prof_2 245 375 IPR005455 GO:0003779
Dere06g2112 375 Pfam Profilin 89 219 IPR005455 GO:0003779
Dere06g2112 375 Pfam Profilin 245 373 IPR005455 GO:0003779
Dere06g2112 375 FunFam Profilin 245 375 - -
Dere06g2112 375 PANTHER PROFILIN 245 374 IPR005455 GO:0003779
Dere06g2112 375 SUPERFAMILY Profilin (actin-binding protein) 90 219 IPR036140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2112 Dere-ChrDere06 36723951 36730298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2112 245 375 Cytoskeleton Gene Families AT2G19760 78.626 3.14e-75 227