Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2109 ATGGCTTCCGATAATAACCTTGATGAAGAAGTTTTGGAGGCAGCTAATATTTTGCTTTCTATAAAACATAGATCGATGAGCATTAAAGAAGCAAGGAAATTACAAGAACTGAAGGCAAAGAATGAAGATCGCATTAAGCGAAGAAGACTGAATATAGAAGAGAGTGATGAAGTCCCCAGAGACTTTCCTGTGGCCGCTCTGAAATGCTTTGTCAAAAAGTGTAGCATTGCAATGGAGAAACAATTGACCAAGAGCGATACAAAGGATGATCAAAACAGACTGAATCTAACTAAGAAAGTTGTGGAAGAACATTTTTTGCTTTTGTTAAAGGATGATGAAGATTTGATAAAAGGAATCCCTGTGACCTTATATGACATATATGGTAATGAATATGCCATGAAATTTAATTATTGGGCACAGAAGTATTATGTACTGAATGGAAGCTGGAAGAGGTTCGTGAAGGAACATGGATTGCGTCCTAATGAAGATTGGGTCAAGGTGTGGATATTTCGCCATTCACAAACCAATAAGCTGTGTTTTGTTATTACTTGGGAAAGAAAATAG 564 0.367 MASDNNLDEEVLEAANILLSIKHRSMSIKEARKLQELKAKNEDRIKRRRLNIEESDEVPRDFPVAALKCFVKKCSIAMEKQLTKSDTKDDQNRLNLTKKVVEEHFLLLLKDDEDLIKGIPVTLYDIYGNEYAMKFNYWAQKYYVLNGSWKRFVKEHGLRPNEDWVKVWIFRHSQTNKLCFVITWERK 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2109 187 Gene3D - 70 187 IPR015300 -
Dere06g2109 187 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 31 184 IPR005508 GO:0003677
Dere06g2109 187 Pfam B3 DNA binding domain 79 162 IPR003340 GO:0003677
Dere06g2109 187 ProSiteProfiles B3 DNA-binding domain profile. 79 186 IPR003340 GO:0003677
Dere06g2109 187 CDD B3_DNA 80 182 IPR003340 GO:0003677
Dere06g2109 187 SMART B3_2 78 173 IPR003340 GO:0003677
Dere06g2109 187 SUPERFAMILY DNA-binding pseudobarrel domain 79 182 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2109 Dere-ChrDere06 36684821 36685384 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2109 75 184 B3 DNA Binding Superfamily AT4G03170 43.243 3.90e-23 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dere06g2109 B3 2.9e-08 CL0405