Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2104 ATGTCAAATTTTCATTATATTTTCTTAGTTTTTCTCCTTCTTCTTCTTCTGCACAATCCCACTTCAACATTATGCCATACCAAAGGAGTTAAACCCAGGCGTTTTTCAGGAATTGGACTATCCAACAATATGACTCGAGTCCAGTCTTCAGAGCAGCAATTCATGAAATGGGTCAATTTTGTTGGTAGCCTCAAACACTCTGTTTTTAAGGCGGCAAAAAACAAGCTTTTTCCATCTTACACTTTGCACGTCTCTAAGAATCCGGCGGTCGGAGATTTTACCACCATTCAAGAAGCCATTGATTCCCTTCCATTAATGAATCTCGTGAGAGTGGTCATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTGAACATTCCTCCTATGAAGTCCTTCATAACTATAGAAGGAGCAGGGGCAGATACAACTATAGTTCAATGGGGTGACACTGCTCAAACACCAGGTCCAAGAGGGCAGCCATTGGGAACATATAGTTCTGCAACTTTTGCGGTGAATGCACCATTTTTCATTGCCAAAAACATAACATTCAAAAACACAAACCCAGTTCCTCCACCAGGAGCAGTTGGGAAGCAGGCAGTGGCATTGAGAATATCAGCAGACACAGCAGCATTCCTGGGATGCAAATTCCTCGGAGCACAGGACACACTGTATGACCATGTGGGAAGGCATTATTACAAAGATTGTTACATTGAAGGGTCAGTTGATTTCATATTCGGCAACGCGCTGTCTCTGTTTGAGGGATGTCACGTGCATGCAATAGCACAGAACCTAGGGGCCGTAACAGCACAAGGAAGAAGCAGCATATTGGAGGACACGGGGTTCTCATTTGTGCACTGTAAGGTCACGGGCTCAGGGGCACTATACCTTGGAAGGGCTTGGGGTCCCTTTTCTCGCGTGGTCTTTGCCTACACTTACATGGACAACATCATCATTCCCAAGGGCTGGTATAACTGGGGCGACCCTAGTCGTGAAATGACTGTATATTATGGACAGTACAAATGCACAGGACCAGGAGCCAGCTTCGCAGGTAGAGTTTCATGGTCGAGAGAACTCACCGATGAGGAAGCCAAACCTTTTATCTCGCTTTCCTTCATTGATGGCAATGAGTGGATCAAAATGTAG 1143 0.4523 MSNFHYIFLVFLLLLLLHNPTSTLCHTKGVKPRRFSGIGLSNNMTRVQSSEQQFMKWVNFVGSLKHSVFKAAKNKLFPSYTLHVSKNPAVGDFTTIQEAIDSLPLMNLVRVVIKVHAGVYTEKVNIPPMKSFITIEGAGADTTIVQWGDTAQTPGPRGQPLGTYSSATFAVNAPFFIAKNITFKNTNPVPPPGAVGKQAVALRISADTAAFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNLGAVTAQGRSSILEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPSREMTVYYGQYKCTGPGASFAGRVSWSRELTDEEAKPFISLSFIDGNEWIKM 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2104 380 SUPERFAMILY Pectin lyase-like 77 379 IPR011050 -
Dere06g2104 380 Gene3D - 78 380 IPR012334 -
Dere06g2104 380 Pfam Pectinesterase 90 375 IPR000070 GO:0030599|GO:0042545
Dere06g2104 380 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Dere06g2104 380 FunFam Pectinesterase 78 380 - -
Dere06g2104 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 71 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2104 Dere-ChrDere06 36631400 36635349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2104 2 378 Carbohydrate Esterase AT5G47500 43.799 7.59e-105 311