Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2079 ATGAACCGGTTGGGTTTTCATCTTTTGATTCTCTATTTCATATTCTTCAGATTTTCCTGCAAAGCACAGAGTTCAGCTGGAGCCCCATCACAGGATGCTATCTCCAATTTCCAGCCAAGTCTTGCTGTTGTGATAGGAATTCTCAGCTTCATGTTTGCTCTGACATGCATTCTTCTCATGTATGCTAAGTTCTGTAACAGAAGAGCTTCAGTTCATGGGGACCTAGAAACTCAACCCGGGCTTCTCAGAACAAGGTCAAGATTCTCAGGTGTCGACAAGACTGTCATAGAATCACTTCCCTTCTTCAGATTTTCTTCCCTTAGAGGATCAAAGGAAGGCCTTGAATGTGCAGTGTGTTTGTCAAAGTTTGAAGATATCGAAATCCTCAGGCTGCTTCCTAAGTGCAAACATGCTTTTCACATCAATTGCATCGATCATTGGCTTGAAAAGCATTCTAGCTGTCCTCTTTGTAGGCACAAGGTCAATCCTGAAGACCAGACCATTTTTACATATTCAAACAGCTTAAGGCTACTTATTAATGGTGGGACAGAACAGGGAGAGGAATCCAACATAGAGCTTTTTGTTCAGAGAGAGGAAGAAAAAGAACCAAATGGGTCATCATCAAGATTCAGTATCGGAAGCAGCTTTAGGAGATTTGTAAAGGGTACTTCAAAGGAAGAAGAATTACCTATACAAAATGAAACTGATGATGGTGATCAAGAAAAGGTCTTTCACAAGCACAAGCACAGGATTAATATGTCCGATTTTGTTTTGAAGAATCGGTGGAGCAACGTGAGCTCCTCAGACCTCATGTTCTTGAACTCAGAGATGCTTGGCTCTATGTCAAGTGTAAGATTTAACAGTCTGGAATCAAATAATGGTCAGATTGAGAGTACAGCAAGAGAAGTAGAAAAGGATCAAGTTATGAACATCAAGGAGGAGATGGAGAGGAAGGTTTCGTTTGAGAGTAAAGTGGGTGGATTAAGTAACAACATTAACTCTGTTTCAGATTCTGCAGAAAATTCCAGTCACACAGCAAAGTATGTGAATCCAGCTGAGAGAAGATCAACGTCGGATATCACTGCTGTCTCTAGATTTGGACATTTGGGCGTGAAAAATGATAGCTTTAGAGGTCCTTCATTGGTTGATGACAACAGTGTTAGAGAGGAAAGAAGGAGGCAGATTTGGCTGCCAATTGCCAGAAGAACAGTTCAATGGTTTGTGAACAGAGAAAAAAGGTTTCAGCAATCTCTGAATGTATAG 1263 0.4093 MNRLGFHLLILYFIFFRFSCKAQSSAGAPSQDAISNFQPSLAVVIGILSFMFALTCILLMYAKFCNRRASVHGDLETQPGLLRTRSRFSGVDKTVIESLPFFRFSSLRGSKEGLECAVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHSSCPLCRHKVNPEDQTIFTYSNSLRLLINGGTEQGEESNIELFVQREEEKEPNGSSSRFSIGSSFRRFVKGTSKEEELPIQNETDDGDQEKVFHKHKHRINMSDFVLKNRWSNVSSSDLMFLNSEMLGSMSSVRFNSLESNNGQIESTAREVEKDQVMNIKEEMERKVSFESKVGGLSNNINSVSDSAENSSHTAKYVNPAERRSTSDITAVSRFGHLGVKNDSFRGPSLVDDNSVREERRRQIWLPIARRTVQWFVNREKRFQQSLNV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2079 420 SMART ring_2 116 157 IPR001841 -
Dere06g2079 420 SUPERFAMILY RING/U-box 95 164 - -
Dere06g2079 420 Pfam Ring finger domain 115 158 IPR001841 -
Dere06g2079 420 CDD RING-H2_EL5-like 115 158 - -
Dere06g2079 420 ProSiteProfiles Zinc finger RING-type profile. 116 158 IPR001841 -
Dere06g2079 420 MobiDBLite consensus disorder prediction 334 354 - -
Dere06g2079 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 167 IPR013083 -
Dere06g2079 420 FunFam RING-H2 finger protein ATL43 91 165 - -
Dere06g2079 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2079 Dere-ChrDere06 36311422 36312684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2079 11 415 C3H Transcription Factor Family AT4G28890 46.032 5.06e-112 334