Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2076 ATGGAACGGATTGTCGGCGGCAAGTACAAGCTCGGCCGCAAGATCGGAAGCGGTTCCTTCGGAGAAATCTACCTTGCTACTCATATCGATACCTTCGAGATAGTCGCGGTTAAAATCGAGAACAATAAAACTAAGCATCCGCAACTGCTTTATGAGGCAAAACTGTACAATATTCTTCAAGGAGGAAGTGGAATTCCTGGCATAAGATGGTCTGGTGTAGACGGGGAGGACAATGTGCTAGTTCTTGATTTGTTGGGACCCAGTCTTGAGGATCTATTTGTTTATTGTGGAAGAAAGTTTTCTTTGAAGACAGTATTAATGTTGGCCGATCAAATGATCACTAGAATAGAATATGTGCATTCAAAGGGCTTTTTACATAGAGATATAAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCTAATCAGGTTTACATAATTGATTTTGGGCTTGCAAAAAGATATCGGGACTCCACAACCAATCGGCACATTCCTTACAGGGAGAACAAAAACTTAACAGGCACTGCACGTTATGCAAGTTGTAATACTCACCTTGGGATTGAGCAAAGCCGACGGGATGATTTGGAGTCACTAGGATACGTGCTTTTGTACTTCCTTAGAGGAAGCCTTCCTTGGCAAGGTTTAAAGGCTGCGACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTATCAACTCCTATTGAGGTCCTTTGCAAATCTCATCCAGTAGAGTTTGCTTCGTACTTTCATTACTGCCACTCTCTGATGTTTGACCAGCGACCTGACTATGGATTTTTGAAGCGCCTCTTCCGGGACCTGTTTGCTCGAGAAGGTTTTGAATTTGATTATGTATTTGATTGGACCATTTTAAAGTACCAGCAAGCACAAAAAAATAGAGTACAGCCTCGCATATCTCCAGTTCCTGGAGCAAGCAACAGTCATGCAATGCCAATGGGTGTTGATAATCATCAAGGTGTTAGTGCTTATTCACAGGATGTCTCAGAGCGCATTAGATTTGGCAATGCTACTGGTTCTGGTGTTAAAATGCAGTTTAAATCACCAGTGGGAAAAAATTTGAGTTCCAGCAATCCTCTTGACAAGAATATTTTTGAGGACGCAAATATGCCCTCTACTTCACATACACTTGCTGAGCAGTAA 1167 0.4173 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENNKTKHPQLLYEAKLYNILQGGSGIPGIRWSGVDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLMFDQRPDYGFLKRLFRDLFAREGFEFDYVFDWTILKYQQAQKNRVQPRISPVPGASNSHAMPMGVDNHQGVSAYSQDVSERIRFGNATGSGVKMQFKSPVGKNLSSSNPLDKNIFEDANMPSTSHTLAEQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2076 388 CDD STKc_CK1_delta_epsilon 8 282 - -
Dere06g2076 388 Gene3D Transferase(Phosphotransferase) domain 1 1 326 - -
Dere06g2076 388 MobiDBLite consensus disorder prediction 357 388 - -
Dere06g2076 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dere06g2076 388 MobiDBLite consensus disorder prediction 353 388 - -
Dere06g2076 388 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2076 388 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2076 388 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Dere06g2076 388 FunFam Casein kinase I isoform delta-like 1 339 - -
Dere06g2076 388 PANTHER CASEIN KINASE-RELATED 7 312 - -
Dere06g2076 388 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere06g2076 388 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2076 Dere-ChrDere06 36290668 36294472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2076 9 215 EF-hand Containing Proteins AT4G23650 29.108 3.13e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dere06g2076 Pkinase 1.3e-27 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g2076 06 36290668 36294472 Dere06g2076 06 36290668 36294472 ECH