Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere06g2068 ATGTCTGTGCCATTAGAGCACGACTATGTAAGCTTATCGGAGGCTCCTATTCCATCAATGGAAAGCTCAGACAAGTTTTCTCAGAGAAGCACCGGCTTGAATTTCAAGGCTACTGAACTACGGCTCGGGTTGCCCGGGTCGGAGTCACCCGAGAGGGATTCGGGTTCTGAGGACAAGAACGGGTACCCATCAGGCATACTGAAGAGTCTTGTGACTGGGGCCAAGAGGGGTTTCTCGGACGCCATTGATGGAGGTTCTGCGAAGTGGGTTCTCTCTGGGAAAGGTGGATCTGAAATGGGTTTGGGTAAAGACTGTGGCTTGTTCTCTCCCAGAGGTGGTAATACCGGGAAGACTCTTGTCGGGTCGGAGCCCAGCAACCATCAAACGGGTTTGGGTCCCTCAGTTGTGAAAGATAGTATTCCAGAGTCAACAAAGCCTTTGCATGAGAAGAAGCCACAGTTTACAGCTCCTGCTGCGAAGGCACAAGTTGTGGGATGGCCACCGATCCGTTCTTTCAGGAAGAACTCAATGGCTACTCAGCCTCAAAAGAACGGTGATGATGCAGAATCAGCCAAGTGTGGATGCCTTTATGTAAAAGTGAGCATGGATGGTGCCCCATACTTGAGGAAAGTGGATCTCAAGAACTTTGTCTCTTACACGGAACTTTCTTCAGCGCTGGAAAAGATGTTCAGTGGATTCACAATCAGTCAATGTGGCTCTCATGGAGTTTCTAGTCGAGATAATATGAGTGAGAGTAGATTGATGGATCTCCTTCATGGTTCAGAATATGTGCTCACTTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCCATTGGGTTAGCACCAAGAGCAATGGAAAAGTGCAAAAGTCGCAACTAG 948 0.481 MSVPLEHDYVSLSEAPIPSMESSDKFSQRSTGLNFKATELRLGLPGSESPERDSGSEDKNGYPSGILKSLVTGAKRGFSDAIDGGSAKWVLSGKGGSEMGLGKDCGLFSPRGGNTGKTLVGSEPSNHQTGLGPSVVKDSIPESTKPLHEKKPQFTAPAAKAQVVGWPPIRSFRKNSMATQPQKNGDDAESAKCGCLYVKVSMDGAPYLRKVDLKNFVSYTELSSALEKMFSGFTISQCGSHGVSSRDNMSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere06g2068 315 ProSiteProfiles PB1 domain profile. 195 297 IPR000270 GO:0005515
Dere06g2068 315 Pfam AUX/IAA family 38 306 IPR033389 -
Dere06g2068 315 FunFam Auxin-responsive protein 190 307 - -
Dere06g2068 315 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 302 IPR003311 GO:0005634|GO:0006355
Dere06g2068 315 MobiDBLite consensus disorder prediction 1 66 - -
Dere06g2068 315 MobiDBLite consensus disorder prediction 16 35 - -
Dere06g2068 315 SUPERFAMILY CAD & PB1 domains 195 296 - -
Dere06g2068 315 Gene3D - 189 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere06g2068 Dere-ChrDere06 36221428 36224200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere06g2068 199 305 B3 DNA Binding Superfamily AT4G23980 31.776 8.83e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere06g2068 AUX_IAA 8.2e-89 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere06g2068 06 36221428 36224200 Dere06g2068 06 36221428 36224200 ECH